Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq64892 95.1 9e-16 >seq64892 Length=10189 Score = 95.1 bits (104), Expect = 9e-16 Identities = 183/261 (70%), Gaps = 22/261 (8%) Strand=Plus/Minus Query 7309 GCTTAAGAGAGAAAGAAAGAGAAATCAAGATCAATGGCCGATTCTTTTCTCTGATGTCCT 7368 ||||||| ||| | ||||||| | ||||| ||||| | ||||||| | | ||||||| Sbjct 2216 GCTTAAG-GAGGAGTAAAGAGAGAGCAAGAAATATGGCTGGTTCTTTTATTTAATGTCCT 2158 Query 7369 GGGATTTACGAGATTATTTTGTTATAACGGAGTATCTGATTAAAACCCATTTTGTTCCCC 7428 |||| | |||| || ||||| | |||||||||||| ||| | |||||||| || Sbjct 2157 GGGAAATGAGAGAGTACTTTGTAAAAACGGAGTATCTAATTGAGCAACATTTTGTCCCAT 2098 Query 7429 TCTTTTA--TGGACTGACAATGGCTGATGATATGACAACAGTAGTACGCAAGATGATG-- 7484 | ||| | ||| | || |||||||||||||| || || ||| |||| |||| Sbjct 2097 TATTTAAATTGG--TTACTATGGCTGATGATATTGTGACCGT--TAC-AAAGACGATGCT 2043 Query 7485 -GAAAACACCAGTGGACAGGGTTCTGATGATTATGAGCACATAGGAATTGCCAATCACTT 7543 ||||| | ||| | || || |||| | | | ||| ||||| ||||| | Sbjct 2042 AGAAAATAGTAGTAGCCA----ACT-ATGACT-TTATCAC-----GATTGCAAATCATAT 1994 Query 7544 GGATTATGAAAAGTGGAATAA 7564 |||||||||||||| ||||| Sbjct 1993 AGATTATGAAAAGTGAAATAA 1973 Score = 89.7 bits (98), Expect = 4e-14 Identities = 181/266 (68%), Gaps = 12/266 (5%) Strand=Plus/Minus Query 7974 ATTTTAAAGAGAATCGAA--GATGGAACAAAGAAAATCGGTCTCATGATAAACCAAGATG 8031 |||||||| | ||| ||| ||||| |||| | | | || | || || | |||| | Sbjct 1728 ATTTTAAAAATAATTGAAATGATGGTACAATCACACTTGGATTGATCATCATTAAAGACG 1669 Query 8032 AGACCATGCAGAGTGCGGACTATTTAAACTACGGGAAAATTCCCATATTCCGGGGGAATA 8091 | || ||||| ||||| || ||| |||| || ||||||||| | || ||| ||||||| Sbjct 1668 AAACTATGCAAAGTGCTGATTATCTAAATTATGGGAAAATTTCTATCTTCACGGGGAATC 1609 Query 8092 TGAGGAACTTGGAGACAAAGCGATGGGCCCGTGTTACCTGTGTCACAAATGATCAAGTAC 8151 | || ||||||||||| |||| | | || | ||| ||||| ||||| || Sbjct 1608 TAAGAAACTTGGAGAC------ATGGTCTTGAGTATCATGTACAACAAACGATCAGTTAT 1555 Query 8152 CCACTCTAGCAAATACCATGTCTACTGTATCCACAAATGC--ATTGACCGTTGCTCACTA 8209 | || || | ||| | | ||| ||||| | |||||||| | | | ||| |||| | Sbjct 1554 CAACCCTTGGAAACATTACGTCAACTGTTACAACAAATGCGAAGGGTCGGTTACTCATAA 1495 Query 8210 CTCAGCTAGTCCTATAAATGCCATGT 8235 |||| || ||| |||| || ||| Sbjct 1494 TTCAG--AGCCCTCAAAATACCTTGT 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39021842277116