Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq5447 152 4e-33 seq50365 95.1 9e-16 >seq5447 Length=4366 Score = 152 bits (168), Expect = 4e-33 Identities = 405/610 (66%), Gaps = 29/610 (5%) Strand=Plus/Minus Query 6243 ATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCTCTTATG 6302 || || || |||| |||||| ||||| ||||| | || |||| |||||| || ||| Sbjct 2774 ATTGGACTCAAAGCTAAAGAAAGAGAAGTAAAAGAAGAGGGTAGATATTTTTCCCTAATG 2715 Query 6303 TCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTTGTC 6362 || ||| || |||||||||||||||| |||| || || | || || | | ||| | Sbjct 2714 TCTTGGGAGATGAGAGAATATTTCGTGGTTACCGAATACCTCATTAAAAAATATTACTTA 2655 Query 6363 CCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAAATGATG 6422 || | ||||| | ||||| ||||||||||| | ||| | | || ||||| |||||| Sbjct 2654 CCTCTTTTTAATAGTTTGACCGTGGCAGATGATTTGACAACATTGATTAAGAAGATGATG 2595 Query 6423 GATACCTCATCAGGACAGGGTTTGGATAAT--TAC-GACTCAATTTGCATAGCCAATCAC 6479 |||| ||| || | || | | ||| | |||||||| || ||||| ||| Sbjct 2594 GATA---TATCGAGATCCCAAATTGACACTGATACAAAATCAATTTGTATTGCCAACCAC 2538 Query 6480 AT-TGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTTTTAG 6538 | ||||| || |||||||| || || | ||| |||| || || ||| Sbjct 2537 CTCGGATTACTCAAAATGGAACAACCATCAAAGAGCCGAAGCCAACAACCCAGTATTTGA 2478 Query 6539 GGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCTTTGA 6598 |||||||| |||| | || || ||||| || || ||||| ||||| | ||| | Sbjct 2477 AGTAATGGGGAAATTTGTAGGGTATCCCAACTTATTTACCCGCACGCATGAGATTTTTCA 2418 Query 6599 AAAAAGTCTGATTTACTATAATGGACGTCCAGACCTGATGCGAGTAAACGGAAACACCTT 6658 ||| | | ||||||| | || | ||||| ||| | | | | | || ||| Sbjct 2417 AAAGTCTTTAATTTACT---ACTGAGAT--AGACCAGAT-CAACTTATAGTAACCAC--- 2367 Query 6659 AGA-AAACAGAACACCTCTCAACG--------TTTGTTGGCAAGGTCAAGCTGGAGGCTT 6709 ||| | | | | || ||| | |||||||| | || |||| ||| || || Sbjct 2366 AGATGGAGAAATCGAGTCACAAGGGGATTGTTTTTGTTGGAATGGGCAAGATGGGGGTTT 2307 Query 6710 AGAGGGGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTCAAAGAGAAGC 6769 ||| ||||| || ||||| |||||||| || | ||| | || || || | |||| Sbjct 2306 AGAAGGGCTGAGGCAAAAGGGATGGAGTATAGTTAATTTACTGGTTATAGATAGAG---- 2251 Query 6770 AAAGATTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTCATTTGCAC 6829 || |||||||||||| || ||| | ||||||||||| ||||| | |||||| || Sbjct 2250 TAAAATTCGAAATACAAAAGTTGGAGTGTTGGCTCAGGGAGATAATCAAGCCATTTGTAC 2191 Query 6830 GCAATATAAA 6839 ||||| ||| Sbjct 2190 TCAATACAAA 2181 >seq50365 Length=2724 Score = 95.1 bits (104), Expect = 9e-16 Identities = 169/241 (70%), Gaps = 13/241 (5%) Strand=Plus/Plus Query 6165 CTTGAAACAAAGG--CAACAAATTGGGGAGAATTTTTGTC----ATCAATAGACAAATAT 6218 ||| ||| |||| |||| |||||| || |||| | | |||||| |||||| Sbjct 1659 CTTTAAATAAAGAATCAACCAATTGGCCAGCATTTATTACCAAAATCAAT-GACAAA--- 1714 Query 6219 GGCTTAGAACTGGAAGATTTGGTCATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTG 6278 | ||||||| ||| || || | || ||| | | || |||||| |||| | ||| Sbjct 1715 -GTTTAGAACAGGATGAGTTAATTATAGGGTTAAGAGCAAAAGAAAGAGAGGTCAAAAGA 1773 Query 6279 GCCGGCAGAtttttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAG 6338 | || ||| |||| | || ||||| ||| || ||||||||||| | ||||| ||| Sbjct 1774 GAAGGAAGAATTTTCGCCCTAATGTCATGGGCCTTACGAGAATATTTCTTTATTACTGAG 1833 Query 6339 TATTTAATAAAGACACATTTTGTCCCCATGTTT-AAGGGATTGACAATGGCAGATGATCT 6397 |||||| | ||| |||| || | ||| ||||| || | ||| || |||||||||||| | Sbjct 1834 TATTTACTGAAGGAACATATTTTACCCTTGTTTGAAAGTATT-ACCATGGCAGATGATAT 1892 Query 6398 A 6398 | Sbjct 1893 A 1893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35271082389528