Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq5447 185 9e-43 seq64995 102 8e-18 seq64996 100 3e-17 >seq5447 Length=4366 Score = 185 bits (204), Expect = 9e-43 Identities = 392/579 (68%), Gaps = 11/579 (2%) Strand=Plus/Minus Query 11069 TGTTTTGATATACCGGATATGATTGATCCAAGTATAATATATAGTGATAAGTCCCATTCA 11128 |||||||| || || || ||||||| || ||| || ||||||||||| ||||| Sbjct 2993 TGTTTTGAAATTCCAGAAGTGATTGAACCCAGTTATATTTATAGTGATAAAAGTCATTCT 2934 Query 11129 ATCAACAGATCAGATGTTCTAAAACACATAAGAGAAAATCCTAATAAGCCAATACCTACA 11188 | | | |||| | | |||| ||| ||||| | ||||||||||||| ||||| | Sbjct 2933 TTAACAAAATCACAATTAATAAATCACTTAAGATTATATCCTAATAAGCCTATACCATCT 2874 Query 11189 AAAAGAGTGTTAAAAACATTGTTGGAAAAACCA--GCGACAGTTTGGCCAGAGTTTTTGA 11246 | | ||| ||| | || || ||| | | | |||| |||||| || || || Sbjct 2873 CACAAAGTCTTATCTA--TTTTTATAAATTCAAAAGAGACAAATTGGCCGGAATTCTTAC 2816 Query 11247 AAAGGGTGAATGATCATGGGCTTGATTGGGAAAGTTTAGTAATTGGTCTTAAGGCTAAAG 11306 ||| | | |||||| | || | ||| || | || ||||||| || || ||||||| Sbjct 2815 AAAAGATAAATGATGAAGGATTAGATAATGATAATTACATAATTGGACTCAAAGCTAAAG 2756 Query 11307 AGAGGGAATTGAAAGATGCTGGGAGGtttttttCATTAATGAGCTGGGAGCTGAGGGAGT 11366 | || ||| | ||||| | || || | |||||| ||||| |||||| |||| || | Sbjct 2755 AAAGAGAAGTAAAAGAAGAGGGTAGATATTTTTCCCTAATGTCTTGGGAGATGAGAGAAT 2696 Query 11367 ACTTCGTATTTACTGAATACCTAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGA 11426 | ||||| |||| |||||||| |||||| | ||| |||| | ||||| || ||| Sbjct 2695 ATTTCGTGGTTACCGAATACCTCATTAAAAAATATTACTTACCTCTTTTTAATAGTTTGA 2636 Query 11427 CTATGGCTGATGACTTACAAACAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAA- 11485 | |||| ||||| || |||| | |||||||||||||| ||| | || ||| Sbjct 2635 CCGTGGCAGATGATTTGACAACATTGATTAAGAAGATGATGGATATATCGAGATCCCAAA 2576 Query 11486 --GGCACTGAGACATATGAGAATATCACCATTGCAAATAACAT-AGATTATGAGAAATGG 11542 | |||||| ||| | | | || ||||| || || | ||||| |||||| Sbjct 2575 TTGACACTGATACAAA--ATCA-ATTTGTATTGCCAACCACCTCGGATTACTCAAAATGG 2519 Query 11543 AATAATTATCAAAGGTATGAATCTAATCATGCAATATTCACAGTGATGGGGCAATTTTTA 11602 || || ||||||| ||| | || | || |||| ||| |||||| ||||| || Sbjct 2518 AACAACCATCAAAGAGCCGAAGCCAACAACCCAGTATTTGAAGTAATGGGGAAATTTGTA 2459 Query 11603 GGGTATCCAAAGTTAATTGCAAGAACTCATGAGTTTTTT 11641 |||||||| || ||| || | | || |||||| ||||| Sbjct 2458 GGGTATCCCAACTTATTTACCCGCACGCATGAGATTTTT 2420 >seq64995 Length=2604 Score = 102 bits (112), Expect = 8e-18 Identities = 275/413 (67%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 11063 ATTAAGTGTTTTGATATACCGGATATGATTGATCCAAGTATAATATATAGTGATAAGTCC 11122 || || || |||||||| || |||||| ||||||| | || ||||||| ||||||| Sbjct 947 ATCAAATGCTTTGATATTCCAGATATGTTTGATCCTACTAATATATATAATGATAAGAGT 1006 Query 11123 CATTCAATCAACAGAT-CAGATGTTCTAAAACACATAAGAGAAAATCCTAATAAGCCAAT 11181 || | || | | || |||| | | ||||| ||| | |||||| ||||| || || Sbjct 1007 CACTTTATGA-CTTATACAGAACTGGTGAAACATATACAATGAAATCCAAATAAACCTAT 1065 Query 11182 ACCTACAAAAAGAGTGTTAAAAACATTGTTGGAAAAACCAGCGACAGTTTGGCCAGAGTT 11241 || ||| ||||| |||| || || | ||| | || || | ||||| | || Sbjct 1066 ACTAACATGTAGAGTATTAATTTCAACTTTAAATAAAACTGCTACCGACTGGCCCAAATT 1125 Query 11242 TTTGAAAAGGGTGAATGATCATGGGCTTGATTGGGAAAGTTTAGT----AATTGGTCTTA 11297 ||| ||||| || |||||| | ||| |||| | |||| | ||| ||| || | | Sbjct 1126 TTTAAAAAGAGTAAATGATTA-GGGATTGAGT---AAAGATGAGTTAATAATAGGGTTGA 1181 Query 11298 AGGCTAAAGAGAGGGAATTGAAAGATGCTGGGAGGtttttttCATTAATGAGCTGGGAGC 11357 ||||||||||| | || ||||| | | || || ||| ||| ||| ||| Sbjct 1182 GAGCTAAAGAGAGAGG-TTAAAAGA-GAACGTAGATTCTTTGTATTGATGTCTTGGACTT 1239 Query 11358 TGAGGGAGTACTTCGTATTTACTGAATACCTAATTAAAGAGCATTTTGTACCATTATTTA 11417 | || || || || || | || || ||||| | || || || | | |||||||||| Sbjct 1240 TAAGAGATTATTTTGTCATAACAGAGTACCTTTTAAAGGAACACATACTTCCATTATTTA 1299 Query 11418 AGGGTCTGACTATGGCTGATGACTTACAAACAGTTATTAAGAAGATGATAGAT 11470 | || | |||||||||||||| || || | | ||||| ||| ||||| Sbjct 1300 AAAGTATAACTATGGCTGATGATATAGTTACCTTAACCAAGAAAATGCTAGAT 1352 >seq64996 Length=3322 Score = 100 bits (110), Expect = 3e-17 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 13172 GGACCATATAGCCCTTATCTGGGATCAAAAACAAAAGAAAGTACAAGTATATTACAACCT 13231 || |||| ||| || ||||| ||||| |||||| |||||||||||| || | |||| Sbjct 435 GGTCCATTTAGACCATATCTAGGATCTAAAACATCTGAAAGTACAAGTCTAGTTAGACCT 494 Query 13232 TGGGAAAAAGAGTCAAACATACCAGTGATCAAAAGAGCAAGTGACTTGAGAAAAGCAATA 13291 ||||||||||| |||| || || || |||||||||||| | ||||||| |||||| Sbjct 495 TGGGAAAAAGAAACAAAGATCCCTGTTATCAAAAGAGCACTTAGAATGAGAAACGCAATA 554 Query 13292 TCATGGTT 13299 | ||||| Sbjct 555 TGTTGGTT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51450650550944