Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031276.1 Length=7202 Score E Sequences producing significant alignments: (Bits) Value seq2480 185 4e-43 >seq2480 Length=9122 Score = 185 bits (204), Expect = 4e-43 Identities = 383/564 (68%), Gaps = 26/564 (5%) Strand=Plus/Minus Query 2389 ATTGTTCGGATTTACAAATTGTTTTCAACGAACTCATGAGATGTTTAAAGATTCATACAT 2448 ||||| |||||| | |||||||||||| |||| |||| ||||||||| | | || Sbjct 4227 ATTGTGTGGATTTTCGAATTGTTTTCAAAGAACACATGCGATGTTTAAGAACTGTGTTAT 4168 Query 2449 CTATTTATTAAACGGATC--ATATTTGCCAAC------TTATCGAGGAGGACATTTTATT 2500 |||||| |||||||||| |||||| |||| |||| | | | |||||| Sbjct 4167 ATATTTACTAAACGGATCCTATATTTACCAAAATATAATTATTCAAAAAATAAATTTATT 4108 Query 2501 TCCGATTTAGGAT-CATGGTATGGTCATTTAGGGGGCATCGAGGGACTACGCCAAAAAGG 2559 | ||| ||||| | |||||| ||||| | || || || || | | || || ||| | Sbjct 4107 CCTGATCTAGGAAGCTTGGTATAGTCATCTTGGTGGAATTGAAGATGTTCGTCAGAAAAG 4048 Query 2560 ATGGACACTGTGGACAATTTCGTTAATTCTACTTGCTGCAGAAAATTACCCCATTAGGCT 2619 |||||| | |||| ||| || || || | ||| ||| || |||| | Sbjct 4047 ATGGACTATACGGACTATTATATTGATATTATATAT---AGAGCCTTATCCTATTACATT 3991 Query 2620 CAAATTAATGGGACAAGGAGATAACCAAATATTAAGAGAAATCTTTCCGCAGGAATTAAC 2679 ||||||||||| ||||| ||||| || ||| ||||||||||| | | || | Sbjct 3990 AAAATTAATGGGTCAAGGGGATAATCAGATAAAAAGAGAAATCTATATCTAAGATAT--- 3934 Query 2680 CCCTGATAGACAATTAGAATTACACTT---TCAATTTCTTCAAC---AACTAAATTTGAT 2733 | || | | ||| | || || || | ||| || || | | || |||| || | Sbjct 3933 -CTTGTAACAGAATGATAAATATACATCACTCATTTACTCAATCTTTAAATAAAGTTT-T 3876 Query 2734 ACTTGAACATATTGGACCTCCCTTAAAGATGGAAGAAACTTGGACCTCACGAGAGTTTTT 2793 | | || ||| | ||||| ||||| | ||| | |||||||| | | | ||||| Sbjct 3875 AAGTAAA---ATTTGCCCTCCTTTAAAATTAGAAAAGACTTGGACTTTTAAAAACTTTTT 3819 Query 2794 TGTATATGGAAAATATTTAATGTATAAAGGAGCTGCTTTACCTATGTACGCTAAACGCAT 2853 ||| || || ||||||||||||||||| |||| ||||||| || |||| ||| || Sbjct 3818 TGTTTACGGCAAATATTTAATGTATAATGGAGGCTCTTTACCAATATACGAGAAAAAGAT 3759 Query 2854 TTGTAGAATGTTTCGACTGTCTAATGAGGATTATCCGACTTTAGAATCCACAATTTCGTC 2913 ||| ||||||||| || |||| || || ||||| | || || ||| |||||||| || Sbjct 3758 TTGCAGAATGTTTAGAATGTCAAACGAAGATTACCTAACACTAAGATCAACAATTTCATC 3699 Query 2914 ATTAACTGCTAATTTGTCCTCTGC 2937 | ||||||| ||||| || |||| Sbjct 3698 ACTAACTGCAAATTTATCAGCTGC 3675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22928069203264