Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_031259.1 Length=9924 Score E Sequences producing significant alignments: (Bits) Value seq5014 102 5e-18 >seq5014 Length=26391 Score = 102 bits (112), Expect = 5e-18 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 4425 CATTCTAAAGAAAGAGAGTTAAAAATAGAAGCTAGATTATTTGCCATGATGGTATTAGAA 4484 ||||||||||||||||| ||||||| || ||||| | ||||| ||||||||| | ||| Sbjct 19424 CATTCTAAAGAAAGAGAAGCAAAAATAAAATCTAGACTTTTTGCTATGATGGTACTGGAA 19365 Query 4485 ATGAGAATGTATTTTGCAACA--ACTGAAAAGAATATATCTGATATTTTATTTAAATATG 4542 ||||| | ||||| ||||| ||||| || |||||| |||| | ||||||||| Sbjct 19364 ATGAGGCTCTATTT--CAACATGACTGAGAAAAATATAGCTGAGCAACTCTTTAAATATA 19307 Query 4543 TTCCAAATCAGACCATGAC 4561 | ||| | || || ||||| Sbjct 19306 TACCACAACAAACAATGAC 19288 Score = 102 bits (112), Expect = 5e-18 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 4425 CATTCTAAAGAAAGAGAGTTAAAAATAGAAGCTAGATTATTTGCCATGATGGTATTAGAA 4484 ||||||||||||||||| ||||||| || ||||| | ||||| ||||||||| | ||| Sbjct 21836 CATTCTAAAGAAAGAGAAGCAAAAATAAAATCTAGACTTTTTGCTATGATGGTACTGGAA 21777 Query 4485 ATGAGAATGTATTTTGCAACA--ACTGAAAAGAATATATCTGATATTTTATTTAAATATG 4542 ||||| | ||||| ||||| ||||| || |||||| |||| | ||||||||| Sbjct 21776 ATGAGGCTCTATTT--CAACATGACTGAGAAAAATATAGCTGAGCAACTCTTTAAATATA 21719 Query 4543 TTCCAAATCAGACCATGAC 4561 | ||| | || || ||||| Sbjct 21718 TACCACAACAAACAATGAC 21700 Score = 102 bits (112), Expect = 5e-18 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 4425 CATTCTAAAGAAAGAGAGTTAAAAATAGAAGCTAGATTATTTGCCATGATGGTATTAGAA 4484 ||||||||||||||||| ||||||| || ||||| | ||||| ||||||||| | ||| Sbjct 25421 CATTCTAAAGAAAGAGAAGCAAAAATAAAATCTAGACTTTTTGCTATGATGGTACTGGAA 25362 Query 4485 ATGAGAATGTATTTTGCAACA--ACTGAAAAGAATATATCTGATATTTTATTTAAATATG 4542 ||||| | ||||| ||||| ||||| || |||||| |||| | ||||||||| Sbjct 25361 ATGAGGCTCTATTT--CAACATGACTGAGAAAAATATAGCTGAGCAACTCTTTAAATATA 25304 Query 4543 TTCCAAATCAGACCATGAC 4561 | ||| | || || ||||| Sbjct 25303 TACCACAACAAACAATGAC 25285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31625026841856