Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_031270.1 Length=10787 Score E Sequences producing significant alignments: (Bits) Value seq1247 87.8 1e-13 >seq1247 Length=281634 Score = 87.8 bits (96), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 5917 AAGGAACGAGAAATGAAGGTAGAACCGAGGTTGTTTGCTATGATGGTATTAGAAATGAGA 5976 || || |||||| ||| || || | |||||||||||||||||||| | ||||||||| Sbjct 212946 AAAGAGCGAGAAGAAAAGATAAAATCAAGGTTGTTTGCTATGATGGTTCTGGAAATGAGA 212887 Query 5977 CTCTACT--ATTGTGCTCTAGAGAAAAATTTAGCCGAGAAAATACTAGAGTACTTCCCGC 6034 || |||| | | || |||||||||| | || ||| || || | |||| |||| | Sbjct 212886 CTATACTTCAATATG--ACAGAGAAAAATCTTGCTGAGCAATTATTCAAGTATATCCCTC 212829 Query 6035 AACAAACCATGACT 6048 ||||||| |||||| Sbjct 212828 AACAAACAATGACT 212815 Score = 87.8 bits (96), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 5917 AAGGAACGAGAAATGAAGGTAGAACCGAGGTTGTTTGCTATGATGGTATTAGAAATGAGA 5976 || || |||||| ||| || || | |||||||||||||||||||| | ||||||||| Sbjct 219496 AAAGAGCGAGAAGAAAAGATAAAATCAAGGTTGTTTGCTATGATGGTTCTGGAAATGAGA 219437 Query 5977 CTCTACT--ATTGTGCTCTAGAGAAAAATTTAGCCGAGAAAATACTAGAGTACTTCCCGC 6034 || |||| | | || |||||||||| | || ||| || || | |||| |||| | Sbjct 219436 CTATACTTCAATATG--ACAGAGAAAAATCTTGCTGAGCAATTATTCAAGTATATCCCTC 219379 Query 6035 AACAAACCATGACT 6048 ||||||| |||||| Sbjct 219378 AACAAACAATGACT 219365 Score = 84.2 bits (92), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 5917 AAGGAACGAGAAATGAAGGTAGAACCGAGGTTGTTTGCTATGATGGTATTAGAAATGAGA 5976 || || |||||| ||| || || | ||||||||||||||||||| | ||||||||| Sbjct 216148 AAAGAGCGAGAAGAAAAGATAAAATCAAGGTTGTTTGCTATGATGGCTCTGGAAATGAGA 216089 Query 5977 CTCTACT--ATTGTGCTCTAGAGAAAAATTTAGCCGAGAAAATACTAGAGTACTTCCCGC 6034 || |||| | | || |||||||||| | || ||| || || | |||| |||| | Sbjct 216088 CTATACTTCAATATG--ACAGAGAAAAATCTTGCTGAGCAATTATTCAAGTATATCCCTC 216031 Query 6035 AACAAACCATGACT 6048 ||||||| |||||| Sbjct 216030 AACAAACAATGACT 216017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34385180377912