Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028394.1 Length=2698 Score E Sequences producing significant alignments: (Bits) Value seq123 78.8 2e-11 >seq123 Length=861190 Score = 78.8 bits (86), Expect = 2e-11 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 2022 ACGAGAATGGATAGGTAGAGGCCAAGGAGTGACGATGACCAACACAAGAGCGGGTTATCT 2081 ||||||||||||||||||||| || | || || || || ||||||||||| || | | Sbjct 663742 ACGAGAATGGATAGGTAGAGGACATGCCGTAACAATCACGAACACAAGAGCTGGCTTCAT 663683 Query 2082 CATGGTGTTTGGACAGGGACCAGT-GGCCTTACGGCAACTCATTGTGAAGATCAGTGC-C 2139 ||||| || ||||||||||| || ||||| | || | | ||||| | ||| | Sbjct 663682 GATGGTTTTCGGACAGGGACCCGTAGGCCTGA-GGTTGTTGGTGTTGAAGGT--TTGCAC 663626 Query 2140 TGC-ATAGCATGGGCCTGCCTACTGATAACGCACACCAGCAACATAGTAGCTCTAGCTAG 2198 || ||||||| ||||| |||||||||||| | ||| |||||||| | Sbjct 663625 AGCTGGAGCATGGTTGTGCCTGCTGATAACGCACCAAAATAACTGGACGGCTCTAGCGTG 663566 Query 2199 TTTGTCTCTGGTGTT-TTGTTTACAGAGTGAGAGAGCAACATCAGTAATGCT 2249 || | | ||||| | | |||||||| || ||| || |||||||||| Sbjct 663565 CATGAGT-TTGTGTTACTTCATGCAGAGTGAAAGGGCATCAACAGTAATGCT 663515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8524637506656