Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq44943 105 5e-19 >seq44943 Length=2415 Score = 105 bits (116), Expect = 5e-19 Identities = 162/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 6344 GGTAGATTTTTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATAT 6403 || ||||| || | |||||||||||| | | |||| |||||||| | | || ||| Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCACT---GAGTAT 801 Query 6404 TTGATAAAGACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACT 6463 |||||||||| ||| ||||| || | ||| | || || |||||||| || ||| |||| Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741 Query 6464 GCAGTCATTAAAAAGATGTTAGATTCCTCATCCGGCCAAGGAT-TGAAGTCATATGAGGC 6522 | || || ||||||||| | || ||| | ||||| | ||| | | || || Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGAC-TACGAATA 682 Query 6523 AATTTGCATAGCCAATCACATTGATTACGAAAAATGGAATAACCACCA 6570 |||| ||||| || ||| | || ||||| || || ||||||||||| Sbjct 681 CATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35565288665000