Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_001560.1
Length=11161
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 105 5e-19
>seq44943
Length=2415
Score = 105 bits (116), Expect = 5e-19
Identities = 162/228 (71%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 6344 GGTAGATTTTTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATAT 6403
|| ||||| || | |||||||||||| | | |||| |||||||| | | || |||
Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCACT---GAGTAT 801
Query 6404 TTGATAAAGACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACT 6463
|||||||||| ||| ||||| || | ||| | || || |||||||| || ||| ||||
Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741
Query 6464 GCAGTCATTAAAAAGATGTTAGATTCCTCATCCGGCCAAGGAT-TGAAGTCATATGAGGC 6522
| || || ||||||||| | || ||| | ||||| | ||| | | || ||
Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGAC-TACGAATA 682
Query 6523 AATTTGCATAGCCAATCACATTGATTACGAAAAATGGAATAACCACCA 6570
|||| ||||| || ||| | || ||||| || || |||||||||||
Sbjct 681 CATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCA 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35565288665000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |