Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_017714.1
Length=15867
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 114 1e-21
>seq44943
Length=2415
Score = 114 bits (126), Expect = 1e-21
Identities = 218/315 (69%), Gaps = 17/315 (5%)
Strand=Plus/Minus
Query 10972 TTTCTTAAAAAAGTCAATGATTTTGGATTGGATTGGGAGAGTTTGGTAATTGGGTTAAAA 11031
|||||| || | ||||||||| |||| || | | | | | ||||||||||||||
Sbjct 944 TTTCTTCAACAGGTCAATGATAATGGAACTGAGTTAGGGCATCTTATAATTGGGTTAAAA 885
Query 11032 --GCAA--AGGAAAGGG--AATTGAAGGATGCAGGTAGATTCTTTTCATTGATGAGTTGG 11085
| || |||| || || | |||| | ||||| |||| || ||| ||||
Sbjct 884 CAGAAACAAGGACAGATCAAACTCAAGG------GAAGATTATTTTGTTTAATGTCTTGG 831
Query 11086 GAGTTAAGAGAGTATTTTGTATTCACAGAGTATTTGATTAAAGAA-CATTTTGTGCCATT 11144
||||||| || ||||| ||| ||||||||||| |||||| || || || || |
Sbjct 830 ACACTAAGAGACTACTTTGT---CACTGAGTATTTGAT-AAAGAATCACTTCGTTCCCCT 775
Query 11145 ATTCAAAGGATTAACTATGGCAGATGATCTACAAACTGTAATTAAAAAGATGATTGATGT 11204
|| | ||| |||| |||||||||||| || ||||||||| ||||||||||| ||
Sbjct 774 CTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATGATGGAAAG 715
Query 11205 ATCAGCAGGACAAGGTACTGAAACCTATGAAAACATAACAATAGCGAATAATATTGACTA 11264
|| | |||||| |||| ||| ||| |||| | ||||| || | | |||||
Sbjct 714 CTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAACCACCTAGACTA 655
Query 11265 TGAGAAGTGGAATAA 11279
|||||||| |||||
Sbjct 654 CGAGAAGTGTAATAA 640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 50605236514300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |