Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_017714.1 Length=15867 Score E Sequences producing significant alignments: (Bits) Value seq44943 114 1e-21 >seq44943 Length=2415 Score = 114 bits (126), Expect = 1e-21 Identities = 218/315 (69%), Gaps = 17/315 (5%) Strand=Plus/Minus Query 10972 TTTCTTAAAAAAGTCAATGATTTTGGATTGGATTGGGAGAGTTTGGTAATTGGGTTAAAA 11031 |||||| || | ||||||||| |||| || | | | | | |||||||||||||| Sbjct 944 TTTCTTCAACAGGTCAATGATAATGGAACTGAGTTAGGGCATCTTATAATTGGGTTAAAA 885 Query 11032 --GCAA--AGGAAAGGG--AATTGAAGGATGCAGGTAGATTCTTTTCATTGATGAGTTGG 11085 | || |||| || || | |||| | ||||| |||| || ||| |||| Sbjct 884 CAGAAACAAGGACAGATCAAACTCAAGG------GAAGATTATTTTGTTTAATGTCTTGG 831 Query 11086 GAGTTAAGAGAGTATTTTGTATTCACAGAGTATTTGATTAAAGAA-CATTTTGTGCCATT 11144 ||||||| || ||||| ||| ||||||||||| |||||| || || || || | Sbjct 830 ACACTAAGAGACTACTTTGT---CACTGAGTATTTGAT-AAAGAATCACTTCGTTCCCCT 775 Query 11145 ATTCAAAGGATTAACTATGGCAGATGATCTACAAACTGTAATTAAAAAGATGATTGATGT 11204 || | ||| |||| |||||||||||| || ||||||||| ||||||||||| || Sbjct 774 CTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATGATGGAAAG 715 Query 11205 ATCAGCAGGACAAGGTACTGAAACCTATGAAAACATAACAATAGCGAATAATATTGACTA 11264 || | |||||| |||| ||| ||| |||| | ||||| || | | ||||| Sbjct 714 CTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAACCACCTAGACTA 655 Query 11265 TGAGAAGTGGAATAA 11279 |||||||| ||||| Sbjct 654 CGAGAAGTGTAATAA 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50605236514300