Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_020805.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq44943 123 2e-24 >seq44943 Length=2415 Score = 123 bits (136), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 6344 GGTAGATTTTTCTCATTGATGTCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTAT 6403 || ||||| || | || |||||||||| || || || |||||||| ||| |||||| Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGT---CACTGAGTAT 801 Query 6404 TTGATCAAGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACA 6463 ||||| |||| |||||| || || | || | || || || ||||| |||||| | ||| Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741 Query 6464 GCAGTGATCAAAAAGATGCTGGAAAGCTCGTCTGGTCAAGGG-CTAACAAACTACGACAG 6522 | || || ||||||||| |||||||||| || |||||| || | ||||||| Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGA-TGACTACGAATA 682 Query 6523 CGTTTGTATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACG 6573 | ||| ||| ||||| || | ||||| || || || ||||| || || || Sbjct 681 CATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAGCG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35434216589920