Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq44943 104 2e-18 seq57075 82.4 5e-12 >seq44943 Length=2415 Score = 104 bits (114), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 11/232 (5%) Strand=Plus/Minus Query 6304 GGGAGATTTTTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATAT 6363 || ||||| || | ||||||| |||| || ||||| || ||||| ||| || ||| Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGT---CACTGAGTAT 801 Query 6364 CTAATTAAGACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACG 6423 | || |||| ||||| || || || || |||| | |||||||||||||| | || Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741 Query 6424 GCTGTAATAAAGAAAATGTTGGAAAGTTCAAGTGGAC-AGGGTCTAAAAGATTATTCGGC 6482 ||||||| || || ||| ||||||| || |||| || ||||||| ||| | | | Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCT----GATGACTACGA 685 Query 6483 A---GTATGCATTGCAAACCACATTGACTATGAGAAATGGAACAACCATCAG 6531 | | | || ||||||||| | ||||| ||||| || || ||||| ||| Sbjct 684 ATACATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAG 633 >seq57075 Length=1743 Score = 82.4 bits (90), Expect = 5e-12 Identities = 109/146 (75%), Gaps = 8/146 (5%) Strand=Plus/Minus Query 6496 AACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACG-GTCAAATGAACCA-A 6553 || ||||| ||||||||||| ||||| ||||| || | |||||| |||| ||| | Sbjct 1102 AATCACATAGACTATGAGAAGTGGAATAACCACCA-AAGAAACGACTCAACCTTTCCAGA 1044 Query 6554 TTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCC----AACCTTATATCGAGGACTCAT 6609 |||||||||| ||||| || ||| | |||| ||| || ||| | |||| ||| Sbjct 1043 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGGATCCAT 984 Query 6610 GAATTCTTTGAGAAAAGTCTCATCTA 6635 |||| |||||| |||||| ||||||| Sbjct 983 GAATGCTTTGAAAAAAGT-TCATCTA 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35331916433760