Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_020806.1
Length=11088
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 104 2e-18
seq57075 82.4 5e-12
>seq44943
Length=2415
Score = 104 bits (114), Expect = 2e-18
Identities = 164/232 (71%), Gaps = 11/232 (5%)
Strand=Plus/Minus
Query 6304 GGGAGATTTTTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATAT 6363
|| ||||| || | ||||||| |||| || ||||| || ||||| ||| || |||
Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGT---CACTGAGTAT 801
Query 6364 CTAATTAAGACACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACG 6423
| || |||| ||||| || || || || |||| | |||||||||||||| | ||
Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741
Query 6424 GCTGTAATAAAGAAAATGTTGGAAAGTTCAAGTGGAC-AGGGTCTAAAAGATTATTCGGC 6482
||||||| || || ||| ||||||| || |||| || ||||||| ||| | | |
Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCT----GATGACTACGA 685
Query 6483 A---GTATGCATTGCAAACCACATTGACTATGAGAAATGGAACAACCATCAG 6531
| | | || ||||||||| | ||||| ||||| || || ||||| |||
Sbjct 684 ATACATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAG 633
>seq57075
Length=1743
Score = 82.4 bits (90), Expect = 5e-12
Identities = 109/146 (75%), Gaps = 8/146 (5%)
Strand=Plus/Minus
Query 6496 AACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACG-GTCAAATGAACCA-A 6553
|| ||||| ||||||||||| ||||| ||||| || | |||||| |||| ||| |
Sbjct 1102 AATCACATAGACTATGAGAAGTGGAATAACCACCA-AAGAAACGACTCAACCTTTCCAGA 1044
Query 6554 TTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCC----AACCTTATATCGAGGACTCAT 6609
|||||||||| ||||| || ||| | |||| ||| || ||| | |||| |||
Sbjct 1043 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGGATCCAT 984
Query 6610 GAATTCTTTGAGAAAAGTCTCATCTA 6635
|||| |||||| |||||| |||||||
Sbjct 983 GAATGCTTTGAAAAAAGT-TCATCTA 959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35331916433760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |