Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_022580.1 Length=12676 Score E Sequences producing significant alignments: (Bits) Value seq44943 98.7 8e-17 >seq44943 Length=2415 Score = 98.7 bits (108), Expect = 8e-17 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 7753 AGGGTCGATTTTTCTCTTTAATGTCATGGGAATTACGGGAATATTTTGTTGTAACAGAAT 7812 |||| |||| || | ||||||||| ||| | || | || || ||||| || || | Sbjct 859 AGGGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTC---ACTGAGT 803 Query 7813 ACTTAATTAAAGAGCATTTTGTTCCATTGTTCCATGGATTAACGATGGCAGATGATTTAA 7872 | || || || | || || ||||| | || | ||| |||| |||||||||||||||| Sbjct 802 ATTTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAA 743 Query 7873 CCACTGTGATGAAAAAGATGCTGGACAATACAATCGGCCAAGGTGGCAAGGACTACACAC 7932 | ||||| |||||||||||| |||| | | | | ||||| | |||||| | Sbjct 742 CAACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAAT 683 Query 7933 AAATTTGCATAGCCAATCACTTTGATTATGAGAAATGGAACAATCATCAG 7982 | |||| ||||| || ||| | || || ||||| || || || || ||| Sbjct 682 ACATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAG 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40408561683200