Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq44943 107 1e-19 >seq44943 Length=2415 Score = 107 bits (118), Expect = 1e-19 Identities = 155/216 (72%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 6002 TAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATT 6061 |||||||||||| | ||||||| ||||| | | || |||||| | ||||||| ||| | Sbjct 841 TAATGTCTTGGACACTAAGAGACTACTTTG---TCACTGAGTATTTGATAAAGAATCACT 785 Query 6062 TTGTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAA 6121 | ||||| | ||| |||| || || ||||| || || | ||| |||| ||||| || | Sbjct 784 TCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGA 725 Query 6122 TGATGGAGTCATCTTCA--GGACAAGGCGCCTCCGACTATGATGCCATTGCCATTGCGAA 6179 ||||||| | || || | |||||| | ||||| || |||| | || || || Sbjct 724 TGATGGA--AAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAA 667 Query 6180 CCATATTGACTATGAAAAATGGAATAACCATCAACG 6215 ||| | ||||| || || || |||||||| || || Sbjct 666 CCACCTAGACTACGAGAAGTGTAATAACCACCAGCG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34065952001280