Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq44943 118 8e-23 >seq44943 Length=2415 Score = 118 bits (130), Expect = 8e-23 Identities = 226/329 (69%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 6146 CAAACTGGAAAGCCTTTCTGAAAGATATCGACGAAAATGGAATGGA-TGATGACGATTTG 6204 |||| |||||| ||||| || | || | || ||||||| || | | | | || | Sbjct 956 CAAATCGGAAAG--TTTCTTCAACAGGTCAATGATAATGGAACTGAGTTAGGGC-ATCTT 900 Query 6205 ATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCATTG 6264 |||||||| ||||| ||| || || | | ||| | || ||||| || | || Sbjct 899 ATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTGTTTA 840 Query 6265 ATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACTAC 6324 ||||| |||| | |||| || || ||||| ||| ||||| || || || | ||| | Sbjct 839 ATGTCTTGGACACTAAGAGACTACTTTGT---CACTGAGTATTTGATAAAGAATCACTTC 783 Query 6325 GTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGATG 6384 |||||| | ||| | || |||| ||||||||||| | ||| | || || || |||||| Sbjct 782 GTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATG 723 Query 6385 ATGGACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAACCAT 6444 ||||| || || | |||||| ||||| || || ||| | | || ||||| Sbjct 722 ATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAACCAC 663 Query 6445 ATTGACTACGAGAAGTGGAATAACCATCA 6473 | |||||||||||||| |||||||| || Sbjct 662 CTAGACTACGAGAAGTGTAATAACCACCA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35443807229560