Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_024473.1
Length=11123
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 118 8e-23
>seq44943
Length=2415
Score = 118 bits (130), Expect = 8e-23
Identities = 226/329 (69%), Gaps = 7/329 (2%)
Strand=Plus/Minus
Query 6146 CAAACTGGAAAGCCTTTCTGAAAGATATCGACGAAAATGGAATGGA-TGATGACGATTTG 6204
|||| |||||| ||||| || | || | || ||||||| || | | | | || |
Sbjct 956 CAAATCGGAAAG--TTTCTTCAACAGGTCAATGATAATGGAACTGAGTTAGGGC-ATCTT 900
Query 6205 ATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCATTG 6264
|||||||| ||||| ||| || || | | ||| | || ||||| || | ||
Sbjct 899 ATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTGTTTA 840
Query 6265 ATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACTAC 6324
||||| |||| | |||| || || ||||| ||| ||||| || || || | ||| |
Sbjct 839 ATGTCTTGGACACTAAGAGACTACTTTGT---CACTGAGTATTTGATAAAGAATCACTTC 783
Query 6325 GTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGATG 6384
|||||| | ||| | || |||| ||||||||||| | ||| | || || || ||||||
Sbjct 782 GTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATG 723
Query 6385 ATGGACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAACCAT 6444
||||| || || | |||||| ||||| || || ||| | | || |||||
Sbjct 722 ATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAACCAC 663
Query 6445 ATTGACTACGAGAAGTGGAATAACCATCA 6473
| |||||||||||||| |||||||| ||
Sbjct 662 CTAGACTACGAGAAGTGTAATAACCACCA 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35443807229560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |