Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_025255.1
Length=11135
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 143 2e-30
>seq44943
Length=2415
Score = 143 bits (158), Expect = 2e-30
Identities = 169/228 (74%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 6308 GGGAAGATTCTTTTCTTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTA 6367
||||||||| |||| ||| ||||| |||| || ||||| || ||||||| |||||||
Sbjct 858 GGGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTA 802
Query 6368 TTTGATTAAGACGCACTTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGAC 6427
|||||| |||| ||||| || || | ||| | || | || ||||| ||||| || ||
Sbjct 801 TTTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAAC 742
Query 6428 AGCGGTGATAAAGAAGATGATGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATC 6487
| | || || || ||||||||||| | || | |||||| | ||| | || ||||
Sbjct 741 AACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATA 682
Query 6488 CATTTGTATAGCCAACCATATTGACTATGAGAAGTGGAACAATCATCA 6535
||||| |||||| ||||| | ||||| |||||||| || || || ||
Sbjct 681 CATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCA 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35482169788120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |