Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025255.1 Length=11135 Score E Sequences producing significant alignments: (Bits) Value seq44943 143 2e-30 >seq44943 Length=2415 Score = 143 bits (158), Expect = 2e-30 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 6308 GGGAAGATTCTTTTCTTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTA 6367 ||||||||| |||| ||| ||||| |||| || ||||| || ||||||| ||||||| Sbjct 858 GGGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTA 802 Query 6368 TTTGATTAAGACGCACTTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGAC 6427 |||||| |||| ||||| || || | ||| | || | || ||||| ||||| || || Sbjct 801 TTTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAAC 742 Query 6428 AGCGGTGATAAAGAAGATGATGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATC 6487 | | || || || ||||||||||| | || | |||||| | ||| | || |||| Sbjct 741 AACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATA 682 Query 6488 CATTTGTATAGCCAACCATATTGACTATGAGAAGTGGAACAATCATCA 6535 ||||| |||||| ||||| | ||||| |||||||| || || || || Sbjct 681 CATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35482169788120