Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_025342.1
Length=11120
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 82.4 5e-12
>seq44943
Length=2415
Score = 82.4 bits (90), Expect = 5e-12
Identities = 183/274 (67%), Gaps = 3/274 (1%)
Strand=Plus/Minus
Query 6241 ATCTCATCATTGGGTTAAAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACGATTCTTCT 6300
|||| || |||||||||||| |||| | | | | ||| | |||||| |||| || |
Sbjct 904 ATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTT 845
Query 6301 CTTTGATGTCTTGGAGATTGAGGGAATATTTCGTTGTTACAGAATATCTTATAAAGGAGC 6360
||| |||||||||| | | || || || | |||| || || ||| | |||||| | |
Sbjct 844 GTTTAATGTCTTGGACACTAAGAGACTA---CTTTGTCACTGAGTATTTGATAAAGAATC 788
Query 6361 ATTTCGTCCCATTATTCAATGGGTTGACAATGGCAGATGACATGACGACAGTGATATCGA 6420
| ||||| || | || | || | |||||||||||||| | || || || || |
Sbjct 787 ACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAA 728
Query 6421 AATTGATGGACAGAACCCAAGGTCAGGGCGGAGAGGACTACACACAAATCTGCATCGCCA 6480
| ||||||| || || | || || || |||||| | | || | || || |
Sbjct 727 AGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAA 668
Query 6481 ATCACATTGACTATGAAAAATGGAACAATCATCA 6514
| ||| | ||||| || || || || || || ||
Sbjct 667 ACCACCTAGACTACGAGAAGTGTAATAACCACCA 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35434216589920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |