Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025342.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq44943 82.4 5e-12 >seq44943 Length=2415 Score = 82.4 bits (90), Expect = 5e-12 Identities = 183/274 (67%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 6241 ATCTCATCATTGGGTTAAAAGGGAAAGAGCGTGAAGTAAAAATTAAGGGACGATTCTTCT 6300 |||| || |||||||||||| |||| | | | | ||| | |||||| |||| || | Sbjct 904 ATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTT 845 Query 6301 CTTTGATGTCTTGGAGATTGAGGGAATATTTCGTTGTTACAGAATATCTTATAAAGGAGC 6360 ||| |||||||||| | | || || || | |||| || || ||| | |||||| | | Sbjct 844 GTTTAATGTCTTGGACACTAAGAGACTA---CTTTGTCACTGAGTATTTGATAAAGAATC 788 Query 6361 ATTTCGTCCCATTATTCAATGGGTTGACAATGGCAGATGACATGACGACAGTGATATCGA 6420 | ||||| || | || | || | |||||||||||||| | || || || || | Sbjct 787 ACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAA 728 Query 6421 AATTGATGGACAGAACCCAAGGTCAGGGCGGAGAGGACTACACACAAATCTGCATCGCCA 6480 | ||||||| || || | || || || |||||| | | || | || || | Sbjct 727 AGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAA 668 Query 6481 ATCACATTGACTATGAAAAATGGAACAATCATCA 6514 | ||| | ||||| || || || || || || || Sbjct 667 ACCACCTAGACTACGAGAAGTGTAATAACCACCA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35434216589920