Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq44943 134 1e-27 seq19033 91.5 1e-14 seq57075 89.7 4e-14 seq5425 82.4 5e-12 >seq44943 Length=2415 Score = 134 bits (148), Expect = 1e-27 Identities = 168/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 6282 GGCAGAtttttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTAT 6341 || ||||| |||| | | ||||| |||| | ||||| || || |||| | |||||| Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCACT---GAGTAT 801 Query 6342 TTAATAAAGACACATTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACA 6401 || ||||||| || || || ||| | ||| | ||| | ||||||||||||||| ||||| Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741 Query 6402 GCTGTCATAAAGAAAATGATGGATACCTCATCAGGACAGGGTTTGGATAATTACGACTCA 6461 |||| || || || |||||||| | ||| | ||| || | ||| | ||||| | Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATAC 681 Query 6462 ATTTGCATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCG 6511 |||| ||||| || ||| | || || |||||||| || || |||||||| Sbjct 680 ATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAGCG 631 >seq19033 Length=9472 Score = 91.5 bits (100), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 6474 AATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTG-T 6532 |||||||| || |||||||||||||||||||| || |||| ||| | ||| | | Sbjct 6548 AATCACATAGAATATGAGAAGTGGAACAATCATCA-AAGAAAATATCAACCTTTCCAGAT 6606 Query 6533 TTTTAGGGTAATGGGACAATTCCTTGGCTACCCC----AATTTGATTGAACGCACCCATG 6588 ||||| ||||||||||| ||||| || |||||| || | || | | | | ||||| Sbjct 6607 TTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCATG 6666 Query 6589 AATTCTTTGAAAAAAGT 6605 ||| ||||||||||||| Sbjct 6667 AATGCTTTGAAAAAAGT 6683 >seq57075 Length=1743 Score = 89.7 bits (98), Expect = 4e-14 Identities = 103/137 (75%), Gaps = 5/137 (4%) Strand=Plus/Minus Query 6474 AATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTG-T 6532 |||||||| || |||||||||||||| || ||||| | || || || | ||| | | Sbjct 1102 AATCACATAGACTATGAGAAGTGGAATAACCACCAAAGAAACGACTCAACCTTTCCAGAT 1043 Query 6533 TTTTAGGGTAATGGGACAATTCCTTGGCTACCCC----AATTTGATTGAACGCACCCATG 6588 ||||| ||||||||||| ||||| || |||||| || | || | | | | ||||| Sbjct 1042 TTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGGATCCATG 983 Query 6589 AATTCTTTGAAAAAAGT 6605 ||| ||||||||||||| Sbjct 982 AATGCTTTGAAAAAAGT 966 >seq5425 Length=42670 Score = 82.4 bits (90), Expect = 5e-12 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 6474 AATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTG-T 6532 |||| ||| || |||||||||||||||||||| || |||| ||| | ||| | | Sbjct 37826 AATCGCATAGAATATGAGAAGTGGAACAATCATCA-AAGAAAATATCAATCTTTCCAGAT 37884 Query 6533 TTTTAGGGTAATGGGACAATTCCTTGGCTACCCC----AATTTGATTGAACGCACCCATG 6588 ||||| ||||||||||| ||||| || |||||| || | || | | | | ||||| Sbjct 37885 TTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCATG 37944 Query 6589 AATTCTTTGAAAAAAGTCTGATTTACTATAATGGACG 6625 ||| ||||||||| || | || ||| || ||||| Sbjct 37945 AATGCTTTGAAAATAGCTTCATCTACCATTCAGGACG 37981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35274372595920