Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025358.1 Length=15024 Score E Sequences producing significant alignments: (Bits) Value seq44943 95.1 1e-15 >seq44943 Length=2415 Score = 95.1 bits (104), Expect = 1e-15 Identities = 154/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 10191 GGTAGATTCTTTTCTTTAATGTCTTACGAATTGAGGGATTATTTTGTATCTACTGAATAC 10250 || ||||| |||| ||||||||||| | | || || || ||||| ||||| || Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTC---ACTGAGTAT 801 Query 10251 CTGATCAAGAAATATTTTGTACCCTTATTTGAAGGTCTAACAATGGCTGATGATTTGAAT 10310 |||| ||||| | || || ||| | ||| | || ||||||||||| |||||||| | Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741 Query 10311 ACAGTAATTAAGAAGATGTTGGATGTCTCAAGCGGCCAGGGAACCAGAGAATATGATTAT 10370 || ||||| || |||||| |||| ||| || | || || | || || || || Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATAC 681 Query 10371 ATAACTATTGCAAACAACATCGATTATGAAAAATGGAATAA 10411 || |||| |||||| || | || || || || || ||||| Sbjct 680 ATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAA 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47910339838270