Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025371.1 Length=11082 Score E Sequences producing significant alignments: (Bits) Value seq44943 98.7 7e-17 >seq44943 Length=2415 Score = 98.7 bits (108), Expect = 7e-17 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 6332 GGAAGGTTCTTTTCACTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATAT 6391 ||||| || |||| | ||||||||| | ||||| |||||||| | | || ||| Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTAT 801 Query 6392 CTGATTAAGACCCATTATGTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACA 6451 |||| |||| || | ||||| || ||| | ||| | || ||||||||||| | ||| Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741 Query 6452 TCAGTCGTGAAGAAGATGTTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCG 6511 | || |||| |||||| |||| | | | | | |||||| | || ||||| || Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATAC 681 Query 6512 ATTTGTATAGCGAATCACATTGATTACGAAAAATGGAACAATCATCAG 6559 |||| |||||| || ||| | || ||||| || || || || || ||| Sbjct 680 ATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAG 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35312735154480