Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq44943 109 4e-20 >seq44943 Length=2415 Score = 109 bits (120), Expect = 4e-20 Identities = 191/275 (69%), Gaps = 5/275 (2%) Strand=Plus/Minus Query 6296 TCTCATCATAGGGTTAAAAG-GAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCT 6354 ||| || || ||||||||| |||| || || | | ||| | |||||||| || | Sbjct 903 TCTTATAATTGGGTTAAAACAGAAACAAG-GACAGATCAAACTCAAGGGAAGATTATTTT 845 Query 6355 CCCTAATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACAC 6414 ||||||| ||| |||| || ||||| |||| | ||||| ||||| || | | Sbjct 844 GTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTATTTGATAAAGAATC 788 Query 6415 ACTATGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGA 6474 ||| || || | || | ||||| || ||||||||||| | ||| | || |||| | Sbjct 787 ACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAA 728 Query 6475 AGATGTTGGACAACACAAATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCA 6534 ||||| |||| | | | | || |||||| | ||||||||| | || | ||| || | Sbjct 727 AGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAA 668 Query 6535 ACCACATTGACTACGAAAAATGGAATAATCATCAG 6569 ||||| | |||||||| || || ||||| || ||| Sbjct 667 ACCACCTAGACTACGAGAAGTGTAATAACCACCAG 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35357491472800