Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_025376.1
Length=11096
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 109 4e-20
>seq44943
Length=2415
Score = 109 bits (120), Expect = 4e-20
Identities = 191/275 (69%), Gaps = 5/275 (2%)
Strand=Plus/Minus
Query 6296 TCTCATCATAGGGTTAAAAG-GAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCT 6354
||| || || ||||||||| |||| || || | | ||| | |||||||| || |
Sbjct 903 TCTTATAATTGGGTTAAAACAGAAACAAG-GACAGATCAAACTCAAGGGAAGATTATTTT 845
Query 6355 CCCTAATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAAACAC 6414
||||||| ||| |||| || ||||| |||| | ||||| ||||| || | |
Sbjct 844 GTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTATTTGATAAAGAATC 788
Query 6415 ACTATGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGA 6474
||| || || | || | ||||| || ||||||||||| | ||| | || |||| |
Sbjct 787 ACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAA 728
Query 6475 AGATGTTGGACAACACAAATGGACAAGGATTGGATGACTACTCCTCTATCTGTATTGCCA 6534
||||| |||| | | | | || |||||| | ||||||||| | || | ||| || |
Sbjct 727 AGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAA 668
Query 6535 ACCACATTGACTACGAAAAATGGAATAATCATCAG 6569
||||| | |||||||| || || ||||| || |||
Sbjct 667 ACCACCTAGACTACGAGAAGTGTAATAACCACCAG 633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35357491472800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |