Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025378.1 Length=11202 Score E Sequences producing significant alignments: (Bits) Value seq44943 104 2e-18 >seq44943 Length=2415 Score = 104 bits (114), Expect = 2e-18 Identities = 160/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 6383 TTCTTTTCTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAATT 6442 || |||| | | |||||||||| | | ||||| ||||| |||| | ||| | | || Sbjct 851 TTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTATTTGATA 795 Query 6443 AAGACTCACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTG 6502 |||| |||||| || || || || ||||||| || |||||||||||| | ||| | || Sbjct 794 AAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTA 735 Query 6503 ATCAAGAAGATGATGGACAGTTCCTCGGGGCAGGGGT-TGACAGATTACTCAGCTGTATG 6561 || || ||||||||||| || ||| | || |||| ||| || ||| | | | Sbjct 734 ATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGA-TGACTACGAATACATTTC 676 Query 6562 CATAGCCAATCATATCGACTACGAAAAATGGAACAATCACCAGCG 6606 ||||| || || | |||||||| || || || || |||||||| Sbjct 675 TATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAGCG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35696360740080