Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_025392.1
Length=11121
Score E
Sequences producing significant alignments: (Bits) Value
seq19033 86.0 4e-13
seq5425 80.6 2e-11
>seq19033
Length=9472
Score = 86.0 bits (94), Expect = 4e-13
Identities = 104/139 (75%), Gaps = 6/139 (4%)
Strand=Plus/Plus
Query 6498 AAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTG- 6556
|||||||||||| |||||||| ||||||||||| || |||| || ||||| | || |
Sbjct 6547 AAATCACATAGAATATGAGAAGTGGAACAATCATCAAAGAA-AATATCAACCTTTCCAGA 6605
Query 6557 TATTCAAAGTGATGGGACAATTTCTGGGATATCC----AAATTTGATATCACGCACCCAT 6612
| || ||||| |||||||| || || || || || || | ||| || | | ||||
Sbjct 6606 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 6665
Query 6613 GAATTCTTTGAGAAGAGTT 6631
|||| |||||| || ||||
Sbjct 6666 GAATGCTTTGAAAAAAGTT 6684
>seq5425
Length=42670
Score = 80.6 bits (88), Expect = 2e-11
Identities = 107/146 (73%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 6498 AAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTG- 6556
||||| |||||| |||||||| ||||||||||| || |||| || ||||| | || |
Sbjct 37825 AAATCGCATAGAATATGAGAAGTGGAACAATCATCAAAGAA-AATATCAATCTTTCCAGA 37883
Query 6557 TATTCAAAGTGATGGGACAATTTCTGGGATATCC----AAATTTGATATCACGCACCCAT 6612
| || ||||| |||||||| || || || || || || | ||| || | | ||||
Sbjct 37884 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 37943
Query 6613 GAATTCTTTGAGAAGAGTTTGATTTA 6638
|||| |||||| || || || || ||
Sbjct 37944 GAATGCTTTGAAAATAGCTTCATCTA 37969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35437413469800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |