Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq19033 86.0 4e-13 seq5425 80.6 2e-11 >seq19033 Length=9472 Score = 86.0 bits (94), Expect = 4e-13 Identities = 104/139 (75%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 6498 AAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTG- 6556 |||||||||||| |||||||| ||||||||||| || |||| || ||||| | || | Sbjct 6547 AAATCACATAGAATATGAGAAGTGGAACAATCATCAAAGAA-AATATCAACCTTTCCAGA 6605 Query 6557 TATTCAAAGTGATGGGACAATTTCTGGGATATCC----AAATTTGATATCACGCACCCAT 6612 | || ||||| |||||||| || || || || || || | ||| || | | |||| Sbjct 6606 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 6665 Query 6613 GAATTCTTTGAGAAGAGTT 6631 |||| |||||| || |||| Sbjct 6666 GAATGCTTTGAAAAAAGTT 6684 >seq5425 Length=42670 Score = 80.6 bits (88), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 6498 AAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTG- 6556 ||||| |||||| |||||||| ||||||||||| || |||| || ||||| | || | Sbjct 37825 AAATCGCATAGAATATGAGAAGTGGAACAATCATCAAAGAA-AATATCAATCTTTCCAGA 37883 Query 6557 TATTCAAAGTGATGGGACAATTTCTGGGATATCC----AAATTTGATATCACGCACCCAT 6612 | || ||||| |||||||| || || || || || || | ||| || | | |||| Sbjct 37884 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 37943 Query 6613 GAATTCTTTGAGAAGAGTTTGATTTA 6638 |||| |||||| || || || || || Sbjct 37944 GAATGCTTTGAAAATAGCTTCATCTA 37969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35437413469800