Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025394.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq44943 107 1e-19 >seq44943 Length=2415 Score = 107 bits (118), Expect = 1e-19 Identities = 111/145 (77%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 6307 GATTCTTTTCGTTAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGA 6366 |||| |||| ||||||||||||| | || | || |||||||| | |||||||||||| Sbjct 853 GATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTATTTGA 797 Query 6367 TTAAAACACACTTTGTTCCGTTATTTCATGGATTGACTATGGCAGATGATATGACGGCTG 6426 | || | ||||| ||||| | ||| | ||| | || |||||||||||| | || ||| Sbjct 796 TAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTG 737 Query 6427 TGATCaaaaaaaTGATGGAGAGTTC 6451 | || ||||| |||||||| || || Sbjct 736 TAATGAAAAAGATGATGGAAAGCTC 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35379869631960