Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_025396.1
Length=15442
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 95.1 1e-15
>seq44943
Length=2415
Score = 95.1 bits (104), Expect = 1e-15
Identities = 221/332 (67%), Gaps = 5/332 (2%)
Strand=Plus/Minus
Query 10512 CGGCCTGCAACAAATTGGCCAGAATTTTTACAAAAAGTGAATGATCATGGATTAGATTGG 10571
|||||| | ||||| || || ||| | ||| | || |||||| ||||| || |
Sbjct 966 CGGCCTTCCGCAAATCGGAAAG--TTTCTTCAACAGGTCAATGATAATGGAACTGAGTTA 909
Query 10572 GAGAAGTTGGTGATAGGTTTAAAAGCCAAGGAAAGAGAGCTTAAAGAAGAAGGTAGGTTT 10631
| | | | | || || |||||| || || || || | ||| | || || ||
Sbjct 908 GGGCATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTA 849
Query 10632 TTCTCTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAG 10691
|| | ||||||| || |||||||||||||||| ||||| || ||||| |||
Sbjct 848 TTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTC---ACTGAGTATTTGATAAAG 792
Query 10692 AAATATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTAATT 10751
|| | | || || | ||| | ||||| ||||||||||||||||| | ||||||||
Sbjct 791 AATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATG 732
Query 10752 AAAAAGATGCTGGACGTGTCATCCGGTCAAGGAACAAGAAACTATGATTATGTATCCATA 10811
||||||||| |||| || | ||||| | |||| || || | || |||
Sbjct 731 AAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATA 672
Query 10812 GCCAACAACATTGATTATGAGAAATGGAATAA 10843
|| ||| || | || || ||||| || |||||
Sbjct 671 GCAAACCACCTAGACTACGAGAAGTGTAATAA 640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 49246599400050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |