Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025396.1 Length=15442 Score E Sequences producing significant alignments: (Bits) Value seq44943 95.1 1e-15 >seq44943 Length=2415 Score = 95.1 bits (104), Expect = 1e-15 Identities = 221/332 (67%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 10512 CGGCCTGCAACAAATTGGCCAGAATTTTTACAAAAAGTGAATGATCATGGATTAGATTGG 10571 |||||| | ||||| || || ||| | ||| | || |||||| ||||| || | Sbjct 966 CGGCCTTCCGCAAATCGGAAAG--TTTCTTCAACAGGTCAATGATAATGGAACTGAGTTA 909 Query 10572 GAGAAGTTGGTGATAGGTTTAAAAGCCAAGGAAAGAGAGCTTAAAGAAGAAGGTAGGTTT 10631 | | | | | || || |||||| || || || || | ||| | || || || Sbjct 908 GGGCATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTA 849 Query 10632 TTCTCTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAG 10691 || | ||||||| || |||||||||||||||| ||||| || ||||| ||| Sbjct 848 TTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTC---ACTGAGTATTTGATAAAG 792 Query 10692 AAATATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTAATT 10751 || | | || || | ||| | ||||| ||||||||||||||||| | |||||||| Sbjct 791 AATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATG 732 Query 10752 AAAAAGATGCTGGACGTGTCATCCGGTCAAGGAACAAGAAACTATGATTATGTATCCATA 10811 ||||||||| |||| || | ||||| | |||| || || | || ||| Sbjct 731 AAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATA 672 Query 10812 GCCAACAACATTGATTATGAGAAATGGAATAA 10843 || ||| || | || || ||||| || ||||| Sbjct 671 GCAAACCACCTAGACTACGAGAAGTGTAATAA 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49246599400050