Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025405.1 Length=11124 Score E Sequences producing significant alignments: (Bits) Value seq44943 78.8 7e-11 >seq44943 Length=2415 Score = 78.8 bits (86), Expect = 7e-11 Identities = 130/187 (70%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 6286 ATCTTATAATTGGATTGAGAGCAAAGGAGAGAGAGTTGAAGAACAAAGGACGATTCTTTG 6345 ||||||||||||| || | | || | || || | || ||| ||| |||| ||| Sbjct 904 ATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTT 845 Query 6346 CACTGATGTCTTGGAGACTTAGAGAATATTTTGTGGTCACAGAATATTTGATCAAAAAGC 6405 | |||||||||| ||| ||||| || ||| ||||| || |||||||| || || | Sbjct 844 GTTTAATGTCTTGGACACTAAGAGACTACTTT---GTCACTGAGTATTTGATAAAGAATC 788 Query 6406 ATTACATCCCTTTGTTCAAAGGCTTGACCATGGCGGATGATCTAAATACAGTAATAGAAA 6465 | | | | || | || | || | || ||||| |||||| ||| || ||||| ||| Sbjct 787 ACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAA 728 Query 6466 AGATGAT 6472 ||||||| Sbjct 727 AGATGAT 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35447004109440