Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq44943 96.9 2e-16 >seq44943 Length=2415 Score = 96.9 bits (106), Expect = 2e-16 Identities = 135/187 (72%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 6313 ATAGGATTAAAAGGTAAGGAAAGAGAGCTGAAAC--AAGCAGGTAGATTCTTTTCATTGA 6370 || || |||||| || || || || | |||| ||| || ||||| |||| || | Sbjct 896 ATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAG--GGAAGATTATTTTGTTTAA 839 Query 6371 TGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATATTTAATAAAACACCATTTTG 6430 |||| ||| || |||| |||||||||| | || ||||| ||||| | || || | Sbjct 838 TGTCTTGGACACTAAGAGACTACTTTGTCACT---GAGTATTTGATAAAGAATCACTTCG 782 Query 6431 TACCTCTATTTAAGGGATTAACAATGGCAGATGATATGACAGAAGTGATCAAAAAGATGC 6490 | || || ||| | ||| ||||||||||||||||| | ||| || || ||||||||| Sbjct 781 TTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATGA 722 Query 6491 TGGAAAG 6497 ||||||| Sbjct 721 TGGAAAG 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35501351067400