Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028230.1 Length=12020 Score E Sequences producing significant alignments: (Bits) Value seq44943 93.3 3e-15 >seq44943 Length=2415 Score = 93.3 bits (102), Expect = 3e-15 Identities = 132/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 7191 ATAATCGGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCATTA 7250 ||||| || |||||| ||| || | |||| ||| | |||||||| |||| ||| Sbjct 899 ATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTGTTTA 840 Query 7251 ATGTCTTGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTATTAT 7310 ||||||||| | ||||||| || ||||| ||||| ||| ||||||| || | | Sbjct 839 ATGTCTTGGACACTAAGAGACTACTTTGT---CACTGAGTATTTGATAAAGAATCACTTC 783 Query 7311 GTTCCATTATTCAAGGGATTGACAATGGCAGATGGATTAATGACAGTGGTGAAGAAAATG 7370 ||||| | || | ||| | ||||||||||||| |||| || || |||| || ||| Sbjct 782 GTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATG 723 Query 7371 ATTGA 7375 || || Sbjct 722 ATGGA 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38311408481920