Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028234.1
Length=12162
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 122 7e-24
seq19033 78.8 7e-11
>seq44943
Length=2415
Score = 122 bits (134), Expect = 7e-24
Identities = 194/275 (71%), Gaps = 5/275 (2%)
Strand=Plus/Minus
Query 7377 ATCTCTTGATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAttttttt 7436
|||| | ||||| ||||| ||| || || | | ||| || || ||||| ||||
Sbjct 904 ATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTT 845
Query 7437 CTCTAATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATTAAAAAAC 7496
| ||||| |||||| | | ||||| |||||||| ||||| | |||| || || |
Sbjct 844 GTTTAATGTCTTGGACACTAAGAGACTACTTTGTC---ACTGAGTATTTGATAAAGAATC 788
Query 7497 ATTTTGTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTTGTGaaaa 7556
| || || || || ||| | |||||||| |||||||||||||| | || || ||||||
Sbjct 787 ACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAA 728
Query 7557 aaaTGATTCGAAACTCAAATGGACAAGGATTAAATGATTAC-AGTAGAATAACTATAGCA 7615
| ||||| || ||| | || |||||| | |||| ||| | || || ||||||||
Sbjct 727 AGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATA-CATTTCTATAGCA 669
Query 7616 AATCATATTGATTATGAAAAGTGGAATAATCATCA 7650
|| || | || || || ||||| ||||| || ||
Sbjct 668 AACCACCTAGACTACGAGAAGTGTAATAACCACCA 634
>seq19033
Length=9472
Score = 78.8 bits (86), Expect = 7e-11
Identities = 113/155 (73%), Gaps = 7/155 (5%)
Strand=Plus/Plus
Query 7615 AAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAA-ATAAATATG 7673
|||||| || || ||||| |||||||| |||||||||||||| ||||| | |
Sbjct 6547 AAATCACATAGAATATGAGAAGTGGAACAATCATCAAAGAAA-ATATCAACCTTTCCAGA 6605
Query 7674 TTTTTAAAGTTATGGGGCAATTCTTAGGTTATCC----TAATTTAATTGTCAGAACCCAT 7729
|||||||||| ||||| || ||| | || || || ||| | || | |||| ||||
Sbjct 6606 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 6665
Query 7730 GAGTTTTTTGAAAAAAGTGTCATATACTACGCTGG 7764
|| | |||||||||||| |||| ||| | || ||
Sbjct 6666 GAATGCTTTGAAAAAAGT-TCATCTACCATGCAGG 6699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 38765365424880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |