Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028234.1 Length=12162 Score E Sequences producing significant alignments: (Bits) Value seq44943 122 7e-24 seq19033 78.8 7e-11 >seq44943 Length=2415 Score = 122 bits (134), Expect = 7e-24 Identities = 194/275 (71%), Gaps = 5/275 (2%) Strand=Plus/Minus Query 7377 ATCTCTTGATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAttttttt 7436 |||| | ||||| ||||| ||| || || | | ||| || || ||||| |||| Sbjct 904 ATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTT 845 Query 7437 CTCTAATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATTAAAAAAC 7496 | ||||| |||||| | | ||||| |||||||| ||||| | |||| || || | Sbjct 844 GTTTAATGTCTTGGACACTAAGAGACTACTTTGTC---ACTGAGTATTTGATAAAGAATC 788 Query 7497 ATTTTGTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTTGTGaaaa 7556 | || || || || ||| | |||||||| |||||||||||||| | || || |||||| Sbjct 787 ACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAA 728 Query 7557 aaaTGATTCGAAACTCAAATGGACAAGGATTAAATGATTAC-AGTAGAATAACTATAGCA 7615 | ||||| || ||| | || |||||| | |||| ||| | || || |||||||| Sbjct 727 AGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATA-CATTTCTATAGCA 669 Query 7616 AATCATATTGATTATGAAAAGTGGAATAATCATCA 7650 || || | || || || ||||| ||||| || || Sbjct 668 AACCACCTAGACTACGAGAAGTGTAATAACCACCA 634 >seq19033 Length=9472 Score = 78.8 bits (86), Expect = 7e-11 Identities = 113/155 (73%), Gaps = 7/155 (5%) Strand=Plus/Plus Query 7615 AAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAA-ATAAATATG 7673 |||||| || || ||||| |||||||| |||||||||||||| ||||| | | Sbjct 6547 AAATCACATAGAATATGAGAAGTGGAACAATCATCAAAGAAA-ATATCAACCTTTCCAGA 6605 Query 7674 TTTTTAAAGTTATGGGGCAATTCTTAGGTTATCC----TAATTTAATTGTCAGAACCCAT 7729 |||||||||| ||||| || ||| | || || || ||| | || | |||| |||| Sbjct 6606 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 6665 Query 7730 GAGTTTTTTGAAAAAAGTGTCATATACTACGCTGG 7764 || | |||||||||||| |||| ||| | || || Sbjct 6666 GAATGCTTTGAAAAAAGT-TCATCTACCATGCAGG 6699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38765365424880