Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq44943 84.2 2e-12 >seq44943 Length=2415 Score = 84.2 bits (92), Expect = 2e-12 Identities = 187/278 (67%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 8225 TCTAATTATTGGGTTAAAAGCCAAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttC 8284 ||| || |||||||||||| ||| || || | || || | || ||||| |||| Sbjct 903 TCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTG 844 Query 8285 ATTAATGTCTTGGGAGTTGAGAGAATATTTTGTATATACAGAGTATTTAATAAAGGAGTA 8344 |||||||||||| | ||||| || ||||| || |||||||| |||||| | | Sbjct 843 TTTAATGTCTTGGACACTAAGAGACTACTTTGT---CACTGAGTATTTGATAAAGAATCA 787 Query 8345 TTTTGTTCCATTATTCCATGGCTTGACCATGGCAGATGACCTGCAGGAA--GTTATTAAG 8402 || ||||| | || | || | || ||||||||||| | | || || || || Sbjct 786 CTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGA--TTTAACAACTGTAATGAAA 729 Query 8403 AAAATGTTGGAGAATGTAAGTGGACAAGGGTTGGATAATTACGAGTATATATCAATTGCG 8462 || ||| |||| | |||| |||||||| ||| | ||||| || || || || || Sbjct 728 AAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCA 669 Query 8463 AATCATATTGATTATGAAAAATGGAACAATCATCAACG 8500 || || | || || || || || || || || || || Sbjct 668 AACCACCTAGACTACGAGAAGTGTAATAACCACCAGCG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41425169485040