Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028236.1
Length=11072
Score E
Sequences producing significant alignments: (Bits) Value
seq57075 93.3 3e-15
seq19033 91.5 1e-14
seq5425 91.5 1e-14
>seq57075
Length=1743
Score = 93.3 bits (102), Expect = 3e-15
Identities = 104/136 (76%), Gaps = 5/136 (4%)
Strand=Plus/Minus
Query 6458 AATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAG-T 6516
||||| ||||| |||||||||||||| || ||||||||||| || | || ||||| |
Sbjct 1102 AATCACATAGACTATGAGAAGTGGAATAACCACCAAAGAAACGACTCAACCTTTCCAGAT 1043
Query 6517 TTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAAT--ATACC--GGACACATG 6572
||| ||||| ||||| ||||| | ||||| ||| | ||| ||| | ||| ||||
Sbjct 1042 TTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGGATCCATG 983
Query 6573 AATTCTTTGAAAATAG 6588
||| ||||||||| ||
Sbjct 982 AATGCTTTGAAAAAAG 967
>seq19033
Length=9472
Score = 91.5 bits (100), Expect = 1e-14
Identities = 105/137 (77%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 6457 AAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAG- 6515
|||||| ||||| |||||||||||||||||||| |||||||| || | || |||||
Sbjct 6547 AAATCACATAGAATATGAGAAGTGGAACAATCATCAAAGAAAATAT-CAACCTTTCCAGA 6605
Query 6516 TTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAAT--ATACC--GGACACAT 6571
|||| ||||| ||||| ||||| | ||||| ||| | ||| ||| | | | |||
Sbjct 6606 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 6665
Query 6572 GAATTCTTTGAAAATAG 6588
|||| ||||||||| ||
Sbjct 6666 GAATGCTTTGAAAAAAG 6682
>seq5425
Length=42670
Score = 91.5 bits (100), Expect = 1e-14
Identities = 111/147 (76%), Gaps = 6/147 (4%)
Strand=Plus/Plus
Query 6457 AAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAG- 6515
||||| ||||| |||||||||||||||||||| |||||||| || | | |||||
Sbjct 37825 AAATCGCATAGAATATGAGAAGTGGAACAATCATCAAAGAAAATAT-CAATCTTTCCAGA 37883
Query 6516 TTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAAT--ATACC--GGACACAT 6571
|||| ||||| ||||| ||||| | ||||| ||| | ||| ||| | | | |||
Sbjct 37884 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 37943
Query 6572 GAATTCTTTGAAAATAGCTGGATATAC 6598
|||| |||||||||||||| || |||
Sbjct 37944 GAATGCTTTGAAAATAGCTTCATCTAC 37970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35280766355680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |