Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq57075 93.3 3e-15 seq19033 91.5 1e-14 seq5425 91.5 1e-14 >seq57075 Length=1743 Score = 93.3 bits (102), Expect = 3e-15 Identities = 104/136 (76%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 6458 AATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAG-T 6516 ||||| ||||| |||||||||||||| || ||||||||||| || | || ||||| | Sbjct 1102 AATCACATAGACTATGAGAAGTGGAATAACCACCAAAGAAACGACTCAACCTTTCCAGAT 1043 Query 6517 TTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAAT--ATACC--GGACACATG 6572 ||| ||||| ||||| ||||| | ||||| ||| | ||| ||| | ||| |||| Sbjct 1042 TTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGGATCCATG 983 Query 6573 AATTCTTTGAAAATAG 6588 ||| ||||||||| || Sbjct 982 AATGCTTTGAAAAAAG 967 >seq19033 Length=9472 Score = 91.5 bits (100), Expect = 1e-14 Identities = 105/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 6457 AAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAG- 6515 |||||| ||||| |||||||||||||||||||| |||||||| || | || ||||| Sbjct 6547 AAATCACATAGAATATGAGAAGTGGAACAATCATCAAAGAAAATAT-CAACCTTTCCAGA 6605 Query 6516 TTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAAT--ATACC--GGACACAT 6571 |||| ||||| ||||| ||||| | ||||| ||| | ||| ||| | | | ||| Sbjct 6606 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 6665 Query 6572 GAATTCTTTGAAAATAG 6588 |||| ||||||||| || Sbjct 6666 GAATGCTTTGAAAAAAG 6682 >seq5425 Length=42670 Score = 91.5 bits (100), Expect = 1e-14 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 6457 AAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAG- 6515 ||||| ||||| |||||||||||||||||||| |||||||| || | | ||||| Sbjct 37825 AAATCGCATAGAATATGAGAAGTGGAACAATCATCAAAGAAAATAT-CAATCTTTCCAGA 37883 Query 6516 TTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAAT--ATACC--GGACACAT 6571 |||| ||||| ||||| ||||| | ||||| ||| | ||| ||| | | | ||| Sbjct 37884 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 37943 Query 6572 GAATTCTTTGAAAATAGCTGGATATAC 6598 |||| |||||||||||||| || ||| Sbjct 37944 GAATGCTTTGAAAATAGCTTCATCTAC 37970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35280766355680