Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq44943 120 2e-23 >seq44943 Length=2415 Score = 120 bits (132), Expect = 2e-23 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 6207 GGAAGATTCTTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATAT 6266 |||||||| |||| || |||||||||| | || | || || ||||| ||| || ||| Sbjct 857 GGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGT---CACTGAGTAT 801 Query 6267 CTTATCAAAACACACTTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACT 6326 | || || | ||||| || ||| | || | |||||||| |||||||||||| |||| Sbjct 800 TTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACA 741 Query 6327 GCTGTCATCaaaaaaaTGTTGGATACATCCTCAGGTCAAGGATTGGACAATTACGAGTCC 6386 |||| || ||||| ||| |||| | ||| | ||||| | || | ||||| | | Sbjct 740 ACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATAC 681 Query 6387 ATTTGTATCGCGAATCACATTGATTATGAGAAATGGAACAACCATCAACG 6436 |||| ||| || || ||| | || || ||||| || || ||||| || || Sbjct 680 ATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCAGCG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35060181643960