Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031215.1 Length=12291 Score E Sequences producing significant alignments: (Bits) Value seq44943 127 2e-25 >seq44943 Length=2415 Score = 127 bits (140), Expect = 2e-25 Identities = 193/274 (70%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 7311 TCTGATTATCGGGTTGAAAGAGAAGGAGAGAGAGATCAAAATTAACGGTCGTTTTTTCTC 7370 ||| || || ||||| ||| |||| | || |||||||| | || || | || || | Sbjct 903 TCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTG 844 Query 7371 TCTGATGTCATGGGATTTGAGAGATTACTTTGTGATAACTGAATATCTAATCAAGACACA 7430 | | ||||| ||| | ||||| |||||||| | |||| ||| | || |||| || Sbjct 843 TTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTATTTGATAAAGAATCA 787 Query 7431 TTTTGTCCCTCTTTTCTATGGTCTAACTATGGCCGATGATATGACGACCGTTGTGAGGAA 7490 || || || || || || || ||||| ||||| |||||| | || || || ||| || Sbjct 786 CTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAA 727 Query 7491 GATGATGGAGAATACTAGCGGTCAGGGCTCTGATGATTATGAACACATCGGAATTGCAAA 7550 ||||||||| | | || | || || |||||||| || ||| |||| || ||||| Sbjct 726 GATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAA 667 Query 7551 CCACCTTGATTACGAAAAATGGAACAACCATCAG 7584 |||||| || ||||| || || || ||||| ||| Sbjct 666 CCACCTAGACTACGAGAAGTGTAATAACCACCAG 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39177762929400