Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq44943 116 3e-22 >seq44943 Length=2415 Score = 116 bits (128), Expect = 3e-22 Identities = 259/381 (68%), Gaps = 27/381 (7%) Strand=Plus/Minus Query 6251 GACCCATCTATTATTTATTCAGATAAAAGTCATTCCCTCACCAGATCAGAA---ATAAAA 6307 || ||||||||||| ||||||||||| ||||| || | || ||| || || | | Sbjct 1087 GATCCATCTATTATATATTCAGATAAGAGTCACTCTATGACTAGAAGTGAGGTCATTAGA 1028 Query 6308 AATTATTTAACCCTTCATCCA--AATTCATCGATACCCTCTAAAAAAGTTCTCTCCACAC 6365 || | ||| |||| ||||| | |||||||||| ||||||||| || Sbjct 1027 GCTTTTAGAACG-----TCCAGGAATTCCT--ATACCCTCTAGAAAAGTTCTTACC---- 979 Query 6366 TTTTAGAAA----GCCCAAGCACAAATTGGCCGGAGTTTCTACAACGAATAAATGATTTT 6421 | ||| | | || | ||||| || ||||||| |||| | |||||| | Sbjct 978 TGTTAACATCACCGGCCTTCCGCAAATCGGAA--AGTTTCTTCAACAGGTCAATGATAAT 921 Query 6422 GGGATCTCAATT-GAACATTTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGAT 6480 || | || | || | ||| | | ||||| |||||| ||||| || || || | || | Sbjct 920 GGAA-CTGAGTTAGGGCATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACT 862 Query 6481 AGGAGGAAGATTTTTCGCTTTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGA 6540 |||||||| || ||||||||||||| | ||||| || |||| | || || Sbjct 861 CAAGGGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTG---TCACTGA 805 Query 6541 ATATTTAATTAAAACTCATTTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCT 6600 ||||| || || | ||| || || || |||||| ||||| |||||||||| |||||| | Sbjct 804 GTATTTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTT 745 Query 6601 AACAACTGTTATCGGAAAGAT 6621 ||||||||| || |||||| Sbjct 744 AACAACTGTAATGAAAAAGAT 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36780103019400