Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031240.1
Length=11541
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 116 3e-22
>seq44943
Length=2415
Score = 116 bits (128), Expect = 3e-22
Identities = 259/381 (68%), Gaps = 27/381 (7%)
Strand=Plus/Minus
Query 6251 GACCCATCTATTATTTATTCAGATAAAAGTCATTCCCTCACCAGATCAGAA---ATAAAA 6307
|| ||||||||||| ||||||||||| ||||| || | || ||| || || | |
Sbjct 1087 GATCCATCTATTATATATTCAGATAAGAGTCACTCTATGACTAGAAGTGAGGTCATTAGA 1028
Query 6308 AATTATTTAACCCTTCATCCA--AATTCATCGATACCCTCTAAAAAAGTTCTCTCCACAC 6365
|| | ||| |||| ||||| | |||||||||| ||||||||| ||
Sbjct 1027 GCTTTTAGAACG-----TCCAGGAATTCCT--ATACCCTCTAGAAAAGTTCTTACC---- 979
Query 6366 TTTTAGAAA----GCCCAAGCACAAATTGGCCGGAGTTTCTACAACGAATAAATGATTTT 6421
| ||| | | || | ||||| || ||||||| |||| | |||||| |
Sbjct 978 TGTTAACATCACCGGCCTTCCGCAAATCGGAA--AGTTTCTTCAACAGGTCAATGATAAT 921
Query 6422 GGGATCTCAATT-GAACATTTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGAT 6480
|| | || | || | ||| | | ||||| |||||| ||||| || || || | || |
Sbjct 920 GGAA-CTGAGTTAGGGCATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACT 862
Query 6481 AGGAGGAAGATTTTTCGCTTTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGA 6540
|||||||| || ||||||||||||| | ||||| || |||| | || ||
Sbjct 861 CAAGGGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTG---TCACTGA 805
Query 6541 ATATTTAATTAAAACTCATTTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCT 6600
||||| || || | ||| || || || |||||| ||||| |||||||||| |||||| |
Sbjct 804 GTATTTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTT 745
Query 6601 AACAACTGTTATCGGAAAGAT 6621
||||||||| || ||||||
Sbjct 744 AACAACTGTAATGAAAAAGAT 724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 36780103019400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |