Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031278.1
Length=12247
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 176 4e-40
>seq44943
Length=2415
Score = 176 bits (194), Expect = 4e-40
Identities = 437/650 (67%), Gaps = 24/650 (4%)
Strand=Plus/Minus
Query 6933 GATCAATTTAAGAAGAAGAAAACATGGATGGTGGATATTGATCAGATGGATAGGAACAAT 6992
|| ||||| |||||||| | | ||||||||| ||| ||| ||| |||| ||| ||
Sbjct 1271 GACCAATTCAAGAAGAAAAGTGCTTGGATGGTGTTTATAGATACGATAGATAAGAATGAT 1212
Query 6993 CTTATGTATCCATTCGTGAAACAAAATACA-------TGGCCTACACCTGCTTTGATAGA 7045
|||||||||| | ||||||| | | ||||| || ||| || ||| |
Sbjct 1211 AAACTGTATCCATTTTAGGAACAAAACATAAAACATATGGCCAACTTCTGTATTCATAAA 1152
Query 7046 TGACTTCGGTGATCACTGGCATCAATTGCCGCTCAAAAAATGTTTTGACATACCGGATAT 7105
|||||| | ||| | ||| || | ||| || || || |||| |||
Sbjct 1151 AATGTTCGGTCCAAAATGGAACAAATGACCAATTAAACCCTGCTTCGAGGTACCATATAA 1092
Query 7106 GTTTGATCCTTCCACGTTGTATTCAGATAAGAGTCACTCTATGAACAAGAAC-GAGGTAA 7164
| | ||||| || | | ||||||||||||||||||||||||| | |||| ||||| |
Sbjct 1091 GATAGATCCATCTATTATATATTCAGATAAGAGTCACTCTATGA-CTAGAAGTGAGGTCA 1033
Query 7165 TC-GATTTTATGAGAAAGAACCCTGATCAGCCGATTCCTTCAAAGAAGGTTTTGTACACC 7223
| || || | |||| | | || || || || || | || ||| | |||
Sbjct 1032 TTAGAGCTTTT-AGAACGTCCAGGAATT--CCTATACCCTCTAGAAAAGTTCT-TACCTG 977
Query 7224 CTAC--TCACTAGGCCTTCTAGAGATTGGCCAACTTTTCTGAAACAAATCAACGATGAGG 7281
|| |||| ||||||| | || || || ||||| |||| |||| ||| | |
Sbjct 976 TTAACATCACC-GGCCTTCCGCAAATCGG--AAAGTTTCTTCAACAGGTCAATGATAATG 920
Query 7282 GTCTCGATATCAACGCCT-TGATAATAGGCTTAAGAGAGAAAGAAAGAGAAATCAAGATC 7340
| || | | || | | ||||| || |||| | ||||| || || | ||||| ||
Sbjct 919 GAACTGAGTT-AGGGCATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTC 861
Query 7341 AATGGCCGATTCTTTTCTCTGATGTCCTGGGATTTACGAGATTATTTTGTTATAACGGAG 7400
|| || |||| |||| | | ||||| ||| || |||| || ||||| | | |||
Sbjct 860 AAGGGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAG 804
Query 7401 TATCTGATTAAAACCCATTTTGTTCCCCTCTTTTATGGACTGACAATGGCTGATGATATG 7460
||| |||| || | || || |||||||||||||| ||||| |||||||| |||||| |
Sbjct 803 TATTTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTA 744
Query 7461 ACAACAGTAGTACGCAAGATGATGGAAAACACCAGTGGACAGGGTTCTGATGATTATGAG 7520
||||| ||| | ||||||||||||| | |||||| ||| || |||||||| || ||
Sbjct 743 ACAACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAA 684
Query 7521 CACATAGGAATTGCCAATCACTTGGATTATGAAAAGTGGAATAATCACCA 7570
|||| || || || ||| | || || || ||||| ||||| |||||
Sbjct 683 TACATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCA 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 39037100214680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |