Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq44943 176 4e-40 >seq44943 Length=2415 Score = 176 bits (194), Expect = 4e-40 Identities = 437/650 (67%), Gaps = 24/650 (4%) Strand=Plus/Minus Query 6933 GATCAATTTAAGAAGAAGAAAACATGGATGGTGGATATTGATCAGATGGATAGGAACAAT 6992 || ||||| |||||||| | | ||||||||| ||| ||| ||| |||| ||| || Sbjct 1271 GACCAATTCAAGAAGAAAAGTGCTTGGATGGTGTTTATAGATACGATAGATAAGAATGAT 1212 Query 6993 CTTATGTATCCATTCGTGAAACAAAATACA-------TGGCCTACACCTGCTTTGATAGA 7045 |||||||||| | ||||||| | | ||||| || ||| || ||| | Sbjct 1211 AAACTGTATCCATTTTAGGAACAAAACATAAAACATATGGCCAACTTCTGTATTCATAAA 1152 Query 7046 TGACTTCGGTGATCACTGGCATCAATTGCCGCTCAAAAAATGTTTTGACATACCGGATAT 7105 |||||| | ||| | ||| || | ||| || || || |||| ||| Sbjct 1151 AATGTTCGGTCCAAAATGGAACAAATGACCAATTAAACCCTGCTTCGAGGTACCATATAA 1092 Query 7106 GTTTGATCCTTCCACGTTGTATTCAGATAAGAGTCACTCTATGAACAAGAAC-GAGGTAA 7164 | | ||||| || | | ||||||||||||||||||||||||| | |||| ||||| | Sbjct 1091 GATAGATCCATCTATTATATATTCAGATAAGAGTCACTCTATGA-CTAGAAGTGAGGTCA 1033 Query 7165 TC-GATTTTATGAGAAAGAACCCTGATCAGCCGATTCCTTCAAAGAAGGTTTTGTACACC 7223 | || || | |||| | | || || || || || | || ||| | ||| Sbjct 1032 TTAGAGCTTTT-AGAACGTCCAGGAATT--CCTATACCCTCTAGAAAAGTTCT-TACCTG 977 Query 7224 CTAC--TCACTAGGCCTTCTAGAGATTGGCCAACTTTTCTGAAACAAATCAACGATGAGG 7281 || |||| ||||||| | || || || ||||| |||| |||| ||| | | Sbjct 976 TTAACATCACC-GGCCTTCCGCAAATCGG--AAAGTTTCTTCAACAGGTCAATGATAATG 920 Query 7282 GTCTCGATATCAACGCCT-TGATAATAGGCTTAAGAGAGAAAGAAAGAGAAATCAAGATC 7340 | || | | || | | ||||| || |||| | ||||| || || | ||||| || Sbjct 919 GAACTGAGTT-AGGGCATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTC 861 Query 7341 AATGGCCGATTCTTTTCTCTGATGTCCTGGGATTTACGAGATTATTTTGTTATAACGGAG 7400 || || |||| |||| | | ||||| ||| || |||| || ||||| | | ||| Sbjct 860 AAGGGAAGATTATTTTGTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAG 804 Query 7401 TATCTGATTAAAACCCATTTTGTTCCCCTCTTTTATGGACTGACAATGGCTGATGATATG 7460 ||| |||| || | || || |||||||||||||| ||||| |||||||| |||||| | Sbjct 803 TATTTGATAAAGAATCACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTA 744 Query 7461 ACAACAGTAGTACGCAAGATGATGGAAAACACCAGTGGACAGGGTTCTGATGATTATGAG 7520 ||||| ||| | ||||||||||||| | |||||| ||| || |||||||| || || Sbjct 743 ACAACTGTAATGAAAAAGATGATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAA 684 Query 7521 CACATAGGAATTGCCAATCACTTGGATTATGAAAAGTGGAATAATCACCA 7570 |||| || || || ||| | || || || ||||| ||||| ||||| Sbjct 683 TACATTTCTATAGCAAACCACCTAGACTACGAGAAGTGTAATAACCACCA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39037100214680