Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031282.1 Length=12651 Score E Sequences producing significant alignments: (Bits) Value seq44943 120 2e-23 >seq44943 Length=2415 Score = 120 bits (132), Expect = 2e-23 Identities = 189/270 (70%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 7744 ATCATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGAAAGACGGGAGATTCTTCTCTCTT 7803 || ||||| ||||| ||||| | || | ||||| | || ||||| || | | | Sbjct 899 ATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTTGTTTA 840 Query 7804 ATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATCAAGCAACACTTT 7863 ||||| ||| ||| || || |||||||| | | || |||||||| ||| | ||||| Sbjct 839 ATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTATTTGATAAAGAATCACTTC 783 Query 7864 GTCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGACTGTTATCAAGAAAATG 7923 || || | || |||| | || |||||||||||| | || ||||| || || || ||| Sbjct 782 GTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAATGAAAAAGATG 723 Query 7924 ATGGACAACGCAAATGGTCAAGGATTAGATACCTATGATTATATATCCATAGCCAATCAT 7983 ||||| | | | | || ||||| | ||| ||| || || || || ||||| || || Sbjct 722 ATGGAAAGCTCCAGTGCACAAGGGTCTGATGACTACGAATACATTTCTATAGCAAACCAC 663 Query 7984 ATAGATTATGAAAAGTGGAATAATCATCAG 8013 |||| || || ||||| ||||| || ||| Sbjct 662 CTAGACTACGAGAAGTGTAATAACCACCAG 633 Score = 107 bits (118), Expect = 2e-19 Identities = 138/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 7966 ATATCCATAGCCAATCATATAGATTATGAAAAGTGGAATAATCATCAGAGGAAAGAATCC 8025 || || ||||| || || ||||| || || ||||||||||| | ||| | | | ||| Sbjct 542 ATTTCTATAGCAAACCACATAGACTACGAGAAGTGGAATAACAACCAGCGTAGTGCATCA 483 Query 8026 ACTACCCCAGTATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCTTA------TT 8079 || ||||||||| ||||| |||||| ||||||||||||| || | | || | Sbjct 482 CCTTACCCAGTATTCAAGGTCATGGGTGAATTCCTAGGTTATCC-ATCTCTAGGTCGCAT 424 Query 8080 AGC-CGAACTCACGAATTCTTCGAAAGGAGTTTAATTTACCATGGCGGGAGAACAGACCT 8138 ||| ||||||||||| || ||||||| |||||| || | ||| ||| ||| | ||||| Sbjct 423 AGCTCGAACTCACGAGTTTTTCGAAAAGAGTTTCATCAATCATCCCGGAAGAGCCGACCT 364 Query 8139 AATGAGGA 8146 | ||||| Sbjct 363 CAAGAGGA 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40328639686200