Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031301.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq19033 78.8 7e-11 >seq19033 Length=9472 Score = 78.8 bits (86), Expect = 7e-11 Identities = 102/138 (74%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 6508 AAATCATATTGACTATGAGAAATGGAACAACCATCAAAGAAAAGCTGCAACTGATCCAG- 6566 |||||| || || |||||||| |||||||| |||||||||||| | |||| ||||| Sbjct 6547 AAATCACATAGAATATGAGAAGTGGAACAATCATCAAAGAAAATAT-CAACCTTTCCAGA 6605 Query 6567 TTTTCAAGGTCATGGGAGAGTTCTTAGGATATCCC----AACTTATTCACAAGAACTCAC 6622 |||| || || |||||| ||||| | || || ||| || | | |||||| || Sbjct 6606 TTTTTAAAGTAATGGGACAGTTCCTCGGGTACCCCTTGTAAATACATAGCAAGAATCCAT 6665 Query 6623 GAATTCTTTCAAGAAAGT 6640 |||| |||| || ||||| Sbjct 6666 GAATGCTTTGAAAAAAGT 6683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35379869631960