Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031302.1 Length=11370 Score E Sequences producing significant alignments: (Bits) Value seq44943 98.7 7e-17 >seq44943 Length=2415 Score = 98.7 bits (108), Expect = 7e-17 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 6418 ATCTTATTATAGGGTTAAAAGAAAAGGAGCGCGAACTGAAAATTGGAGGCAGATTCTTTG 6477 ||||||| || ||||||||| | || | | | | ||| | || ||||| ||| Sbjct 904 ATCTTATAATTGGGTTAAAACAGAAACAAGGACAGATCAAACTCAAGGGAAGATTATTTT 845 Query 6478 CCTTGATGTCCTGGGAAATAAGGGATTATTTTGTAATGACTGAGTACTTGATTAAAACAC 6537 || ||||| ||| | |||| || || ||||| | ||||||| ||||| || | | Sbjct 844 GTTTAATGTCTTGGACACTAAGAGACTACTTTGTCA---CTGAGTATTTGATAAAGAATC 788 Query 6538 ACTTTGTTCCTCTATTTGATGGACTCACAATGGCAGATGACTTAACAACGGTAAT 6592 |||| ||||| || ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 787 ACTTCGTTCCCCTCTTTTACGGACTAACAATGGCAGATGATTTAACAACTGTAAT 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36233436559920