Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq44943 96.9 2e-16 >seq44943 Length=2415 Score = 96.9 bits (106), Expect = 2e-16 Identities = 219/324 (68%), Gaps = 9/324 (3%) Strand=Plus/Plus Query 4598 CGTTGATGGTTATTCCATTTGCTATAATCAAAGTGATTGGCGATACAGATGTTCTCGTAC 4657 || || |||||||| || || || || | ||| || || ||| | |||| ||||| Sbjct 631 CGCTGGTGGTTATTACACTTCTCGTAGTCTAGGTGGTTTGCTATAGAAATGTATTCGTAG 690 Query 4658 CCTTCACTTCCTTGACC--TGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATAT 4715 | ||| ||||| | || || | | ||||||| || || || || || || | || Sbjct 691 TCATCAGACCCTTGTGCACTGGAGCTTT--CCATCATCTTTTTCATTACAGTTGTTAAAT 748 Query 4716 CATCTGCCATAGTTAGTCCTTTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTG 4775 |||||||||| |||||||| | ||| | ||||| |||||| |||| || | | || | Sbjct 749 CATCTGCCATTGTTAGTCCGTAAAAGAGGGGAACGAAGTGATTCTTTATCAAATACTCAG 808 Query 4776 TTATTACAAAATACTCTCGTAAAGCCCAGGTCAATAGAGCATAAAATCTTCCTCCAATCT 4835 | ||||| || |||| || | ||| | || || | | | |||||||| | | Sbjct 809 ---TGACAAAGTAGTCTCTTAGTGTCCAAGACATTAAACAAAATAATCTTCCCTTGAGTT 865 Query 4836 TGATCTCTCGCTCTTTTCCTTTAAGTCCTATGATGAGATCCTCAAGAGTTAG-TCCATTG 4894 |||||| || | ||| ||| | || || || |||| | | | | | || |||||| Sbjct 866 TGATCTGTCCTTGTTTCTGTTTTAACCCAATTATAAGATGCCCTA-ACTCAGTTCCATTA 924 Query 4895 TCATTGACTTCTTGCAGGAACTTT 4918 |||||||| | ||| || |||||| Sbjct 925 TCATTGACCTGTTGAAGAAACTTT 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36035230007360