Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_031690.1
Length=11308
Score E
Sequences producing significant alignments: (Bits) Value
seq44943 96.9 2e-16
>seq44943
Length=2415
Score = 96.9 bits (106), Expect = 2e-16
Identities = 219/324 (68%), Gaps = 9/324 (3%)
Strand=Plus/Plus
Query 4598 CGTTGATGGTTATTCCATTTGCTATAATCAAAGTGATTGGCGATACAGATGTTCTCGTAC 4657
|| || |||||||| || || || || | ||| || || ||| | |||| |||||
Sbjct 631 CGCTGGTGGTTATTACACTTCTCGTAGTCTAGGTGGTTTGCTATAGAAATGTATTCGTAG 690
Query 4658 CCTTCACTTCCTTGACC--TGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATAT 4715
| ||| ||||| | || || | | ||||||| || || || || || || | ||
Sbjct 691 TCATCAGACCCTTGTGCACTGGAGCTTT--CCATCATCTTTTTCATTACAGTTGTTAAAT 748
Query 4716 CATCTGCCATAGTTAGTCCTTTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTG 4775
|||||||||| |||||||| | ||| | ||||| |||||| |||| || | | || |
Sbjct 749 CATCTGCCATTGTTAGTCCGTAAAAGAGGGGAACGAAGTGATTCTTTATCAAATACTCAG 808
Query 4776 TTATTACAAAATACTCTCGTAAAGCCCAGGTCAATAGAGCATAAAATCTTCCTCCAATCT 4835
| ||||| || |||| || | ||| | || || | | | |||||||| | |
Sbjct 809 ---TGACAAAGTAGTCTCTTAGTGTCCAAGACATTAAACAAAATAATCTTCCCTTGAGTT 865
Query 4836 TGATCTCTCGCTCTTTTCCTTTAAGTCCTATGATGAGATCCTCAAGAGTTAG-TCCATTG 4894
|||||| || | ||| ||| | || || || |||| | | | | | || ||||||
Sbjct 866 TGATCTGTCCTTGTTTCTGTTTTAACCCAATTATAAGATGCCCTA-ACTCAGTTCCATTA 924
Query 4895 TCATTGACTTCTTGCAGGAACTTT 4918
|||||||| | ||| || ||||||
Sbjct 925 TCATTGACCTGTTGAAGAAACTTT 948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 36035230007360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |