Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_028371.1 Length=16248 Score E Sequences producing significant alignments: (Bits) Value seq3729 708 0.0 >seq3729 Length=41653 Score = 708 bits (784), Expect = 0.0 Identities = 762/1014 (75%), Gaps = 37/1014 (4%) Strand=Plus/Plus Query 12309 CGACTACAAGAGGACAAGACAATGCTGCAGCAGACAACTTACCGCGCAGCAAACACAATC 12368 || || || ||||||| ||| |||||||| || || || || || ||||||||||| ||| Sbjct 12678 CGTCTTCAGGAGGACAGGACCATGCTGCAACAAACCACCTATCGTGCAGCAAACACGATC 12737 Query 12369 TGGGAGTGGGACCCCCGATGCTCAACCGTCAAGCAAGTGAGCAGAGATCGCGTGGAGGTC 12428 ||||| | ||||||| | ||||| || ||||||||||| |||||||| || || ||||| Sbjct 12738 TGGGAATAGGACCCCAGGTGCTCCACAGTCAAGCAAGTCAGCAGAGACCGAGTTGAGGTG 12797 Query 12429 CTTGGGGCGATCCAAGATCGCATTGACGCCCCACATTATTTCCCAGCCCCT-GATGTCCT 12487 || || || || ||||| || || ||| ||||||| | ||||| |||| || ||||| Sbjct 12798 CTGGGCGCCATTCAAGACCGGATCGACTCCCCACACTTCCTCCCAACCCCCAGACGTCCT 12857 Query 12488 GGAAGAACTGCACACCATCGCAGGTCACATCCGGACAAAGATTAACACCAAACTGAGGCC 12547 ||||||||||| |||||||||||||||| || |||| | | || ||||||| || Sbjct 12858 AGAAGAACTGCATGTCATCGCAGGTCACATCAGGTCAAACACTGACGTAAAACTGACCCC 12917 Query 12548 GTTCACATTCGAGGAGGCGCGCGTCATCATCAACAAACAGAGCGCTGCCGGAATGTTGGA 12607 |||||||||||| |||||||| |||||||||| || ||||| || |||| | Sbjct 12918 GTTCACATTCGAAAAGGCGCGCACTGTCATCAACAAGCAAAGCGCAGCTGGAA------A 12971 Query 12608 CGAATGGTCTAACATGGAGGCCTTCCTAAATGACCCTCGCGCAAAGGACATCTGCGAGGA 12667 ||| | ||| ||||| || || || || || Sbjct 12972 CGACCAG--------------------AAA----------GCAAAAGAAATATGTGAAGA 13001 Query 12668 GGCCATCCAAAAACTATACCGAGGAGAAAATGTTGTGGAGTATTACAACACCGTCCACAA 12727 |||||| || ||||| ||||| || | || ||||||||||| ||||||||| ||||||| Sbjct 13002 GGCCATGCAGAAACTCTACCGTGGCAAGAACGTTGTGGAGTACTACAACACCATCCACAA 13061 Query 12728 CAAAGTTGAATCTAAGGTCAGCGACAACACCCGCCCCCGCCTCATCAATTACGGGAGCAT 12787 ||| | || || ||||| ||||| |||| |||||| ||||||||||| ||||| ||||| Sbjct 13062 CAAGTTAGAGTCCAAGGTGAGCGAAAACATCCGCCCACGCCTCATCAACTACGGCAGCAT 13121 Query 12788 TGTAGCACGAGTCTGTGACCACATGCTCTTTGGGCCCTTCGTCAAGCTCCACTACGGTGG 12847 || || || ||||| |||||||||||||| || || ||||||||| |||||||||| || Sbjct 13122 CGTCGCCCGCGTCTGCGACCACATGCTCTTCGGCCCGTTCGTCAAGTTCCACTACGGCGG 13181 Query 12848 CACCAAGCTTTTCAAACACGCCAGCGGAGGGACCCCAATTGCAGAGATGGGAGACCGCAT 12907 | |||| ||| | ||||| ||| | ||||| || || || || || |||||||| Sbjct 13182 AAACAAGACCTTCCAGCACGCATTTGGAAGCACCCCGATCGCTGAAATCGGCGACCGCAT 13241 Query 12908 TAAGAAAAACTGGGACCACTGGTCTTCCAAGTGTGTGGGAGATGAAGAACCCGTGGCTGC 12967 ||| |||||||||| |||| | ||||||| || || || | || || ||||| Sbjct 13242 CAAGGGGAACTGGGACCGCTGGGCCAGAGAGTGTGTCGGCGAGGAGAAGCCAGTCGCTGC 13301 Query 12968 TGTCGGCGACGCCTCACGGTGGGACCACAGCATGTACCCAGCTCTCATGGCCCTGGAGGC 13027 ||| || ||||||| || |||||||||||| | |||||||| |||| ||| || || || Sbjct 13302 TGTTGGAGACGCCTAACACTGGGACCACAGCCTCTACCCAGCCCTCACGGCTCTTGAAGC 13361 Query 13028 CGAGTTCGTCTCCAGCTTCTATGACAAAGAGCACTGGCCGGCCATACAATCAGCCCTAGA 13087 ||||||||||||| || || | ||| ||||| ||| | | || | ||||||| || Sbjct 13362 GGAGTTCGTCTCCACATTTTACGGCAAGGAGCATTGGACAGAAATCAAGACAGCCCTCGA 13421 Query 13088 ACATGTCTGCTGGCCGTTGTGCTTCACGAGGCTTGGATTCGTATTCACCAACCCGGGCCA 13147 ||||||||||||||| | |||||||| | || || ||||| |||| |||||| || || Sbjct 13422 ACATGTCTGCTGGCCAATATGCTTCACACGACTGGGCTTCGTCTTCAGCAACCCTGGTCA 13481 Query 13148 GCGGATGAGTGGGCACGTGTTTACCTGGATGAACTCATTCCTCAACGCCGTCCTGCACGA 13207 |||||||| || ||||| || || || |||||||| ||||| ||||| || || || || Sbjct 13482 ACGGATGAGCGGCCACGTTTTCACGTGAATGAACTCGTTCCTGAACGCGGTTCTCCATGA 13541 Query 13208 GTGGGGTTGGAAGAAGACCCTCAACATCCCACTCGAAGCTAACCTAGACGATTACCTCAC 13267 ||||| || ||||||||||||||| || ||||||| || ||||| || || |||||||| Sbjct 13542 GTGGGCATGAAAGAAGACCCTCAACCTCGCACTCGACGCAAACCTGGATGACTACCTCAC 13601 Query 13268 CTTCGAAGTAGATGGGGATGACAACTACCACATTTCCACCACCAGTGTCATCAA 13321 ||| || | || || || |||||||||||||| ||||| |||| ||||| || Sbjct 13602 CTTTGAGTTTGACGGAGACGACAACTACCACATCTCCACATCCAGCGTCATTAA 13655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51758187251212