Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_028265.1
Length=12004
Score E
Sequences producing significant alignments: (Bits) Value
seq4011 84.2 2e-12
seq716 78.8 7e-11
>seq4011
Length=40498
Score = 84.2 bits (92), Expect = 2e-12
Identities = 189/278 (68%), Gaps = 6/278 (2%)
Strand=Plus/Minus
Query 1541 GATACAAGACTCCTTCTGGTTTATCTATTACATCCGACCTCTGCT-CTGGATCATGTCAA 1599
||||||||||||||||| | ||||| || ||||| || | ||| | || |||||| |
Sbjct 13605 GATACAAGACTCCTTCTAGCATATCTTTTTAATCCGGCC-CAGCTGCATGACCATGTCGA 13547
Query 1600 CTACATAGAGCAATAT-TG-TGAGTCAGCAACGTTGGATGAATTGATGAACTACCTCGTC 1657
||||| | ||| | || | |||| | || || || || ||||| |||| |||||
Sbjct 13546 TTACATTAA--AATGTGTGATCAGTCGACGACATTAGAGGAGCTGATGGACTATCTCGTA 13489
Query 1658 ATAAGGATAGTTCCAAAAGAAAAGGAGCACAAGATTGACTTCAGAGGTTTCGGATGTAAG 1717
|| || |||||||||| || |||||| ||| || | | | || || ||| | ||
Sbjct 13488 ATCCGGGTAGTTCCAAAGGAGAAGGAGATCAAAGTTCAATATCGCGGGTTTGGACGCAAC 13429
Query 1718 ACTTACGAAGATAGACTCCGGTGTTTGGCTCAGGAGAAGGCAGTCATGCAGTACTTAGAC 1777
|| ||||| || | | | | |||||||| |||||| | |||| | | ||
Sbjct 13428 ACCATGGAAGACAGGCACAGATCATTGGCTCAAGAGAAGAATGCTATGCGATTTCTGGAT 13369
Query 1778 CTTTATAGCGATGAGCAGGCGATGACTCTATCTGAACT 1815
||| |||||||| || ||||| ||||||| ||
Sbjct 13368 GAATATTCAGATGAGCAAGCAATGACCTTATCTGAGCT 13331
>seq716
Length=237629
Score = 78.8 bits (86), Expect = 7e-11
Identities = 69/86 (80%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 2048 TACTACTGGTACGGACAAGATGGGGGTATTGAAGGACTCAATCAAGATACATGGGTTGTA 2107
||||||||| | || || || || || |||||||| ||||||||||| || |||||| |
Sbjct 85868 TACTACTGGCAAGGGCAGGACGGAGGAATTGAAGGGCTCAATCAAGACACGTGGGTTATT 85927
Query 2108 GTATACATTAGTCAGATCAAGACTGC 2133
|| ||||| |||||| ||||||||
Sbjct 85928 GTGTACATAGCTCAGATTAAGACTGC 85953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 38287411737344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |