Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_028265.1 Length=12004 Score E Sequences producing significant alignments: (Bits) Value seq4011 84.2 2e-12 seq716 78.8 7e-11 >seq4011 Length=40498 Score = 84.2 bits (92), Expect = 2e-12 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1541 GATACAAGACTCCTTCTGGTTTATCTATTACATCCGACCTCTGCT-CTGGATCATGTCAA 1599 ||||||||||||||||| | ||||| || ||||| || | ||| | || |||||| | Sbjct 13605 GATACAAGACTCCTTCTAGCATATCTTTTTAATCCGGCC-CAGCTGCATGACCATGTCGA 13547 Query 1600 CTACATAGAGCAATAT-TG-TGAGTCAGCAACGTTGGATGAATTGATGAACTACCTCGTC 1657 ||||| | ||| | || | |||| | || || || || ||||| |||| ||||| Sbjct 13546 TTACATTAA--AATGTGTGATCAGTCGACGACATTAGAGGAGCTGATGGACTATCTCGTA 13489 Query 1658 ATAAGGATAGTTCCAAAAGAAAAGGAGCACAAGATTGACTTCAGAGGTTTCGGATGTAAG 1717 || || |||||||||| || |||||| ||| || | | | || || ||| | || Sbjct 13488 ATCCGGGTAGTTCCAAAGGAGAAGGAGATCAAAGTTCAATATCGCGGGTTTGGACGCAAC 13429 Query 1718 ACTTACGAAGATAGACTCCGGTGTTTGGCTCAGGAGAAGGCAGTCATGCAGTACTTAGAC 1777 || ||||| || | | | | |||||||| |||||| | |||| | | || Sbjct 13428 ACCATGGAAGACAGGCACAGATCATTGGCTCAAGAGAAGAATGCTATGCGATTTCTGGAT 13369 Query 1778 CTTTATAGCGATGAGCAGGCGATGACTCTATCTGAACT 1815 ||| |||||||| || ||||| ||||||| || Sbjct 13368 GAATATTCAGATGAGCAAGCAATGACCTTATCTGAGCT 13331 >seq716 Length=237629 Score = 78.8 bits (86), Expect = 7e-11 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 2048 TACTACTGGTACGGACAAGATGGGGGTATTGAAGGACTCAATCAAGATACATGGGTTGTA 2107 ||||||||| | || || || || || |||||||| ||||||||||| || |||||| | Sbjct 85868 TACTACTGGCAAGGGCAGGACGGAGGAATTGAAGGGCTCAATCAAGACACGTGGGTTATT 85927 Query 2108 GTATACATTAGTCAGATCAAGACTGC 2133 || ||||| |||||| |||||||| Sbjct 85928 GTGTACATAGCTCAGATTAAGACTGC 85953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38287411737344