Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_014791.1 Length=9070 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 6e-17 >seq1 Length=11693564 Score = 98.7 bits (108), Expect = 6e-17 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 7311 CCTGTTTTAGTCGAAGATACATGTCTCTGCTTTAATGCTTTCAATGGACTTCCTGGGCCA 7370 || ||| | || |||||||||| | || ||||||||| | |||| | ||||| ||| Sbjct 8902278 CCCGTTATTGTTGAAGATACATCCTTATGTTTTAATGCTATGGGTGGATTACCTGGACCA 8902219 Query 7371 TACATAAAATGGTTTTTAAAAGAATTGGGTCTTGAAGGTGTTGTTAAAATGCTGTCA-GC 7429 ||||| ||||||||||||||||||||| | || ||| | |||||||||| ||| | Sbjct 8902218 TACATCAAATGGTTTTTAAAAGAATTGAAACCAGAGGGTTTATTTAAAATGCT-TCATGG 8902160 Query 7430 ATTTGGAGATAAA 7442 ||||| ||||||| Sbjct 8902159 ATTTGAAGATAAA 8902147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28908756094760