Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_001430.1 Length=7390 Score E Sequences producing significant alignments: (Bits) Value seq643 419 1e-113 seq906 145 4e-31 seq1144 136 2e-28 seq945 127 1e-25 seq4341 82.4 4e-12 seq3031 78.8 4e-11 >seq643 Length=7254 Score = 419 bits (464), Expect = 1e-113 Identities = 832/1202 (69%), Gaps = 61/1202 (5%) Strand=Plus/Minus Query 131 TCAACAGGAGGGGGTACAAACCAGTACCACCACGAACACACACTTCTGTTTCCCCGG--T 188 |||| || ||| | || |||||| ||| || || ||||||||||||||||| | Sbjct 7247 TCAATAGCAGGTGTGGCACACCAGTCATACCTTGATCAAGCACTTCTGTTTCCCCGGACT 7188 Query 189 GAAGTTGCATAGACTGTACCCACGGTTGAAAGCGATGAA-TCCGTTACCCGCTTAGGTAC 247 || | |||| ||| | | ||| |||| | || | | ||||||||| | ||| Sbjct 7187 GAGTATCAATAGGCTGCTCGCGCGGCTGAAGGAGAAAACGTTCGTTACCCGACCAACTAC 7128 Query 248 TTCGAGAAGCCTAGTATCATCTTGGAATCTTCGATGCGTTGCGATCAGCACTCTACCCCG 307 |||||||||| ||||| || | || | | | ||| || ||||||| ||||| Sbjct 7127 TTCGAGAAGCTTAGTACCACCATGAACGAGGCAGGGTGTTTCGCTCAGCACA--ACCCC- 7071 Query 308 AGTGTAGCTTGGGTCGATGAGTCTGGACACCCCACACCGGCGACG-TGGTCCAGGCTGCG 366 ||||||| | || |||||||| || ||| || |||||| ||| ||||||| Sbjct 7070 AGTGTAGATCAGGCTGATGAGTCACTGCAACCCCCATGGGCGACCATGGCAGTGGCTGCG 7011 Query 367 TTGGCGGCCTACCCATGGCTAGCACCATGGGACGCT--AGTTGTGAACAAGGTGCGAAGA 424 |||||||||| ||||||| | |||||||||||| | || ||| || |||| ||||| Sbjct 7010 TTGGCGGCCTGCCCATGGAGAAATCCATGGGACGCTCTAATTCTGA-CATGGTGTGAAGA 6952 Query 425 GCCTATTGAGCTACCTGAGAGTCCTCCGGCCCCTGAATGCGGCTAATCCCAACCACGGAG 484 ||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||| Sbjct 6951 GCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAG 6892 Query 485 CAAATGCTCACAATCCAGTGAGTGGTTTGTCGTAATGCGCAAGTCTGTGGCGGAACCGAC 544 || |||||||| | |||||| ||||| |||||||| | |||| |||| ||||||||||| Sbjct 6891 CACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGAC 6832 Query 545 TACTTTGGGTGTCCGTGTTTCCTTTTATTTTTATTATGGCTGCTTATGGTGACAATCTGA 604 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | Sbjct 6831 TACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCAAA 6772 Query 605 GA-TTGTTATCATATAGCTATTGGATTAGCCATCCG--GTGATATCTTGAAATTTTGCCA 661 || |||||| ||||||||||||||||| |||||||| ||| | | |||| | Sbjct 6771 GAGTTGTTACCATATAGCTATTGGATTGGCCATCCGGTGTGCAACAGGGCAATTGT---- 6716 Query 662 TAACTTTTTCACAAATCCTACAACATTA-CACTACACTTT-------CTCTTGAA-TAAT 712 | || | || | | | | ||||| |||| | | | |||| || | || Sbjct 6715 TTACCTATTTATTGGTTTTGTACCATTATCACTGAAGTCTGTGATCACTCTCAAATTCAT 6656 Query 713 TGAGA----CAAC----TCATA-ATGGGAGCACAAGTTTCTAGACAACAAACTGGCACGC 763 | || |||| ||| | ||||| |||| || || | ||||| | || | | Sbjct 6655 TTTGACCCTCAACACAATCAAACATGGGCTCACAGGTGTCCACACAACGCTCCGGTTCAC 6596 Query 764 ATGAGAATGCTAACGTTGCCACTGGAGGCTCAAGCATAACTTACAATCAAATAAATTTCT 823 | || || ||||| || || | || || | |||| || | | || |||| || Sbjct 6595 ACGAAAACTCTAACTCAGCTACCGAGGGTTCCACTATAAACTATACTACCATTAATTACT 6536 Query 824 ACAAAGATAGTTATGCAGCCTCAGCTAGTAAACA-AGATTTCAGCCAAGACCCATCCAAG 882 | |||||| ||||| ||| |||| |||| || || || || || |||||| |||| Sbjct 6535 ATAAAGATTCCTATGCCGCCACAGCAGGTAAGCAGAGCCTTAAG-CAGGACCCAGACAAG 6477 Query 883 TTCACAGAGCCTGT---AG-CTGAAGCCCTAAAAGCTGG-AGCCCCAGTCCTAAAATCAC 937 || || | ||||| || | | || ||| ||| ||| ||| ||||||| | Sbjct 6476 TTTGCAAATCCTGTCAAAGACATCTTCACTGAAA--TGGCAGCGCCA---TTAAAATCTC 6422 Query 938 CATCAGCAGAGGCTTGTGGTTATAGTGACAGGGTCTTACAGCTCAAATTAGGAAATTCCA 997 |||| || ||||| |||||||| ||||| |||| ||| | | | || ||||| | Sbjct 6421 CATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACTATTGGCAATTCTA 6362 Query 998 GTATAGTTACCCAAGAAGCAGCTAACAT--TTGTTGTGCCTATGGAGAGTGGCCCACCTA 1055 || ||| ||||||||||| ||||| | || || |||||| |||||||| |||| Sbjct 6361 CCATCACTACGCAAGAAGCAGCAAACATCATAGT--TGGCTATGGTGAGTGGCCTTCCTA 6304 Query 1056 TCTACCTGATAATGAGGCAGTGGCTATTGATAAACCTACCCAGCCAGAAACATCCACAGA 1115 | || ||| || || | || ||||| || | ||||| || | Sbjct 6303 CTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAA 6244 Query 1116 TAGATTTTACACTTTAAAATCCAAGAAATGGGA-AAG-CAACAGTACTGGGTGGTGGTGG 1173 ||| |||||||| || | | || ||||| ||| || | | ||||||| ||| Sbjct 6243 TAGGTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATC--CAAGGGGTGGTACTGG 6186 Query 1174 AAGCTCCCTGATGCTTTGAATCAAATTGGTATGTTTGGTCAAAACGTCCAATACCACTAC 1233 || |||| |||| || | | ||| || | ||||||||||| | || | ||||||| Sbjct 6185 AAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATGCACAGTTCCACTAC 6126 Query 1234 CTGTATAGGAGTGGGTTCCTGTGC---CACGTACAATGCAATGCTACAAAATTTCACCAA 1290 || ||| || |||||| ||| ||||| || |||||||||| || || |||||| Sbjct 6125 CTCTATCGGTCAGGGTTC---TGCATTCACGTGCAGTGCAATGCTAGTAAGTTCCACCAA 6069 Query 1291 GG 1292 || Sbjct 6068 GG 6067 Score = 149 bits (164), Expect = 3e-32 Identities = 246/351 (70%), Gaps = 18/351 (5%) Strand=Plus/Minus Query 4354 GAAGCTAAGAGGGTTTCTGCCTTAGAAAGGAAAATTAACAACTACATACAGTTCAAGTCC 4413 ||||| |||||||| | ||| |||||| || ||| || || ||||| ||||||||| | Sbjct 2976 GAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGC 2917 Query 4414 AAATCTCGCATTGAACCAGTATGTTTGATAATACATGGATCTCCAGGCACTGGGAAGTCA 4473 ||| || |||||||| ||||| | || || || || || || |||||||||||| Sbjct 2916 AAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCA 2857 Query 4474 GTGGCATCTAACCTCATTGCCAGAGCTATTACAGAAAA-----ACT-GGGTGGGGATTCT 4527 ||||| | | ||||| ||||| || |||| || ||| ||| | |||| Sbjct 2856 TTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGTGTGTATTCC 2797 Query 4528 TACTCACTCCCACCTGATCCAAAATATTTTGATGGGTATAAACAACAGACAGTGGTC-CT 4586 | | || || || ||| | | ||||| || || |||||||||| | ||| || Sbjct 2796 T------TACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGA---TCGTCACT 2746 Query 4587 G--ATGGATGACTTAATGCAAAATCCAGATGGTAATGATATTGCTATGTTTTGTCAGATG 4644 | ||||| ||| || ||||| ||||| || || || || | | |||||||||||| Sbjct 2745 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATG 2686 Query 4645 GTATCTACTGTAGACTTTATACCACCAATGGCCAGTCTTGAGGAAAAGGGA 4695 || || || || || |||||||| || ||||| ||| ||||| |||||| Sbjct 2685 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGA 2635 Score = 140 bits (154), Expect = 2e-29 Identities = 277/408 (68%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 6864 CAAAGGTATTGATTTAGATCAGTTCAAAATGATAGCATATGGTGATGATGTAATTGCTAG 6923 |||||| || ||| ||||| | | || ||| | || || || |||||||| | ||||| Sbjct 463 CAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAG 404 Query 6924 TTACCCACATGAGATAGAC--CCTGGCCTATTGGCAAAAGCCGGGAAAGAGTATGGATTA 6981 |||||| || ||| |||| ||||||| | | || || |||||||| || Sbjct 403 TTACCCCTTCCCAATTGACTGTCTGG--AGTTGGCAAGAACAGGCAAGGAGTATGGTCTA 346 Query 6982 ATAATGACCCCAGCAGACAAGAGTAGTGGTTTTACTGAGACTACTTGGGAGAATGTTACC 7041 | |||||||| || |||||| | |||| |||| ||| |||||||||| || Sbjct 345 ACTATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACT 286 Query 7042 TTTTTGAAGAGGTATTTCAGAGCAGATGAACAGTATCCCTTTTTGATCCACCCAGTTATG 7101 || |||||||| ||| | ||| | || | || ||| | |||||||| ||| Sbjct 285 TTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATG 226 Query 7102 CCAATGAAGGAAATCCATGAGTCAATTAGATGGACAAAAGATCCGAGAAACACACAAGAT 7161 ||||||| ||| || || || || ||| | ||||| |||||| | ||| || |||||| Sbjct 225 CCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGAT 166 Query 7162 CATGTGAGATCCTTGTGCCTACTKGCCTGGCACAATGGTGAAGAAACTTACAATGAATTC 7221 || ||| | ||| | ||| || | || |||||||| || |||| || | |||| Sbjct 165 CACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAGTATGAAAAATTT 106 Query 7222 TGCAGGAAAATCAGAACTGTACCTGTAGGAAGAGCTTTAGCTTTACCA 7269 || ||||||| | || || | |||| ||| || ||| ||||| Sbjct 105 GTGAGTGCAATCAGATCAGTTCCAATTGGAAAAGCATTGGCTATACCA 58 Score = 116 bits (128), Expect = 2e-22 Identities = 599/937 (64%), Gaps = 40/937 (4%) Strand=Plus/Minus Query 5752 TATGGTTTCCTTAATCTTGGGGGGACCCCCACCCACAGAATATTAATGTATAACTTCCCC 5811 ||||| || | || ||| | || | ||||| ||||| | | ||||| || ||||| Sbjct 1590 TATGGGTTTTTGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCA 1531 Query 5812 ACAAGAGCAGGACAATGTGGAGGGGTGGTGACCACCACTGGTAAAGTGATTGGCATTCAC 5871 |||| ||||||||| ||||| || || ||||| || |||||||||||||| || ||| Sbjct 1530 ACAAAAGCAGGACAGTGTGGTGGTGTTGTGACTGCCGTGGGTAAAGTGATTGGGATCCAC 1471 Query 5872 GTTGGTGGCAATGGTGCGCAAGGCTTT---GCTGCCATGCTATTGCAAAATTACTTTACT 5928 |||||||||| ||| |||||| || |||||| || | | | | ||| | Sbjct 1470 ATTGGTGGCAACGGTAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACT--TTTGCA 1413 Query 5929 GAGAAGCAGGGTGAGATAGTATCCATTGAGA---------AAACTGGAGTCTTTA---TA 5976 | ||| || |||||||| || || || ||||||| || | | Sbjct 1412 GTGAA-CAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAACATC 1354 Query 5977 AATGCGCCAGCTAAAACCAAATTAGAACCTAGTGTCTTCCATGAAGTATTTGAGGGAGTT 6036 || | || || || || | ||||| |||||||| || || || || || || | Sbjct 1353 AACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACT 1294 Query 6037 AAGGAACCTGCAGTTTTACATAGCAAGGACAAGAGACTGAAGGTAGATTTTGAGGAAGCA 6096 || || || ||||| | ||| || ||| || ||| | || || ||||| | || Sbjct 1293 AAAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCT 1234 Query 6097 ATATTTTCCAAATACGTTGGTAACAAAAC-CATGCTAATGGATGAGTACATGGAGGAGGC 6155 | ||||| |||||||| || |||| |||| | || |||| | ||||||| Sbjct 1233 CTTTTTTCAAAATACGTGGGGAACACGCTTCATGA-ACCCGACGAGTTTGTCAAGGAGGC 1175 Query 6156 AGTGGACCACTATGTAGGTTGTTTAGAGCCCCTTGATATTAGCACCGAACCCA--TTAAA 6213 | || |||| | ||| | ||||| | ||| ||| | | | Sbjct 1174 GGCCTTACATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACC--ACCAAGATGAGC 1117 Query 6214 TTAGAAGAAGCCATGT-ATGGTATGGATGGCCTTGAAGCCTTGGACCT-CACTACCAGTG 6271 | || || || |||| | || | || ||| ||||| | || || ||| || |||| Sbjct 1116 ATGGAGGATGC-ATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCAC-ACAAGTG 1059 Query 6272 CTGGCTACCCATACTTGTTGCAG--GGGAAGAAGAAAAGAGACATCTTCAACAGACAAAC 6329 | || || |||||| |||| || | ||||||| ||||| || | | ||| Sbjct 1058 CAGGATATCCATACAG--TGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAAC 1001 Query 6330 TAGAGATA-CAACAGAGATGACCAAAATGT---TGGACAAATATGGTGTGGATTTGCCCT 6385 | | ||| || || |||||| || | | ||||||| ||||| ||||| | || | Sbjct 1000 TCGCGATGTCAGCA-AGATGA---AATTCTACATGGACAAGTATGGGTTGGATCTACCGT 945 Query 6386 TTGTCACATTTGTCAAAGATGAACTCAGAAGCAGAGAGAAAGTAGAGAAGGGCAAGTCTA 6445 || | ||| ||||||||||| || || || || | |||| || |||||| Sbjct 944 ACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTC 885 Query 6446 GATTGATTGAAGCTAGTTCTTTAAATGATTCAGTTGCCATGCGAGTGGCATTTGGAAACC 6505 | | || ||||| || ||||||| ||||| | || || || ||||||| ||| Sbjct 884 GTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACC 825 Query 6506 TTTATGCAACATTCCACAAAAATCCAGGAGTCGCCACTGGGAGCGCTGTTGGATGTGATC 6565 |||||| | | |||||| |||||||| ||| || |||||||| || | | Sbjct 824 TTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACC 765 Query 6566 CAGATTTGTTTTGGTCCAAAATCCCAGTTATSTTAGATGGAAAAATTTTTGCATTTGACT 6625 ||||| |||| ||| ||| | ||| || | | ||| |||| || ||||||| Sbjct 764 CAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACT 705 Query 6626 ACACAGGTTATGATGCCAGTCTCTCACCAGTCTGGTT 6662 || | || ||||| || |||||| ||||| ||||| Sbjct 704 ACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTT 668 Score = 95.1 bits (104), Expect = 6e-16 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 1991 GCAGGTATTACACCCACTGGTCTGGTTCACTGGAGATGACTTTCATGTTTTGTGGGAGCT 2050 || |||| |||||||| ||||| || |||||||| | || |||||||| ||| || Sbjct 5350 GCGGGTACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCT 5291 Query 2051 TTATGACCACAGGTAAATTGATCATTTGCTACACACCACCTGGTGG-ATCTAGCCCAACA 2109 ||||| | || || || || |||| ||||||||||| || || || ||||| Sbjct 5290 TTATGGCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAA-G 5232 Query 2110 GATAGGATGCAAGCCATGCTAGCTACTCATGTGGTGTGGGACTTTGGGCTGCAATCTAGT 2169 || || | |||||| | | || || || | |||||||||||||||||||| | Sbjct 5231 GACCGGGCGACCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCT 5172 Query 2170 ATCACCATTATAATTCCTTGGATC 2193 ||||| || |||| || |||||| Sbjct 5171 GTCACCCTTGTAATACCATGGATC 5148 >seq906 Length=2416 Score = 145 bits (160), Expect = 4e-31 Identities = 292/428 (68%), Gaps = 24/428 (6%) Strand=Plus/Plus Query 4354 GAAGCTAAGAGGGTTTCTGCCTTAGAAAGGAAAATTAACAACTACATACAGTTCAAGTCC 4413 ||||||||| | || | || |||| | || ||| ||||||||||| ||||||||| | Sbjct 1092 GAAGCTAAGCGAGTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGC 1151 Query 4414 AAATCTCGCATTGAACCAGTATGTTTGATAATACATGGATCTCCAGGCACTGGGAAGTCA 4473 ||| || |||||||| |||||| | || || || || ||||||||||| ||||| Sbjct 1152 AAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACTGGAAAGTCC 1211 Query 4474 GTGGCATCTAACCTCATTGCCAGAGCTATTACAGAAAA-----ACTGG-GTGGGGATTCT 4527 | || | ||||||| | | || |||| || ||| ||| | Sbjct 1212 CTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCACTCTAGTGTG------ 1265 Query 4528 TACTCACTCCCACCTGATCCAAAATATTTTGATGGGTATAAACAACAGACAGTGGTCC-- 4585 |||||||| ||||| || || | ||||||| ||||||||||| || ||||||| Sbjct 1266 TACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCA---AGTGGTCACA 1322 Query 4586 -TGATGGATGACTTAATGCAAAATCCAGATGGTAATGATATTGCTATGTTTTGTCAGATG 4644 | |||||||| | ||||| || || || || || || | | ||||| |||||| Sbjct 1323 GTTATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGTCATTATTTTGCCAGATG 1382 Query 4645 GTATCTACTGTAGACTTTATACCACCAATGGCCAGTCTTGAGGAAAAGGGA--ACCCTGT 4702 || || || || || ||||| ||||||||||| ||| || ||||||||| ||| Sbjct 1383 GTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGGAGTTTCCTTC 1442 Query 4703 ACA-CTAGCCCATTTCTGATTGCGACCACCAATGCTGGCTCAATTCACGCACCTACAGTT 4761 ||| ||| |||| | || || ||||||| ||| || ||| | |||||||| Sbjct 1443 ACATCTA---AATTTGTTATCGCATCCACCAACGCTAGCAACATTATAGTGCCTACAGTG 1499 Query 4762 TCAGATTC 4769 ||||| || Sbjct 1500 TCAGACTC 1507 >seq1144 Length=1302 Score = 136 bits (150), Expect = 2e-28 Identities = 225/324 (69%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 6880 GATCAGTTCAAAATGATAGCATATGGTGATGATGTAATTGCTAGTTACCCACATGAGATA 6939 ||| |||| || ||| | || ||||| || ||||| | ||||||||||| | || Sbjct 867 GATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATT 926 Query 6940 GACCCTGGCCTA---TTGGCAAAAGCCGGGAAAGAGTATGGATTAATAATGACCCCAGCA 6996 || | |||| ||||| || | || ||||||||||| || | ||||| || ||| Sbjct 927 GA---TTGCCTTGAGTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCA 983 Query 6997 GACAAGAGTAGTGGTTTTACTGAGACTACTTGGGAGAATGTTACCTTTTTGAAGAGGTAT 7056 ||||| |||| | ||| || ||||| |||| |||||| ||||||| Sbjct 984 GACAAATCACCCTGTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGA 1043 Query 7057 TTCAGAGCAGATGAACAGTATCCCTTTTTGATCCACCCAGTTATGCCAATGAAGGAAATC 7116 ||| |||| | || | ||| || || || ||||| ||||| |||| || ||| Sbjct 1044 TTCTTGCCAGACCACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATC 1103 Query 7117 CATGAGTCAATTAGATGGACAAAAGATCCGAGAAACACACAAGATCATGTGAGATCCTTG 7176 ||||| || ||| ||||||| ||||| || | ||||| |||||||| ||| | ||| || Sbjct 1104 CATGAATCCATTCGATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTG 1163 Query 7177 TGCCTACTKGCCTGGCACAATGGT 7200 || || | || |||||||||||| Sbjct 1164 TGTCTGTTGGCATGGCACAATGGT 1187 >seq945 Length=2018 Score = 127 bits (140), Expect = 1e-25 Identities = 87/97 (90%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 547 CTTTGGGTGTCCGTGTTTCCTTTTATTTTTATTATGGCTGCTTATGGTGACAATCTGAG- 605 || |||||||||||||||||||||||| |||| |||||||||||||||||||| || Sbjct 2018 CTCTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATTACAGA 1959 Query 606 ATTGTTATCATATAGCTATTGGATTAGCCATCCGGTG 642 ||||||| ||||||||||||||||| ||||||||||| Sbjct 1958 ATTGTTACCATATAGCTATTGGATTGGCCATCCGGTG 1922 Score = 116 bits (128), Expect = 2e-22 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 1972 ACACTGCTAGGCAACATCAGCAGGTATTACACCCACTGGTCTGGTTCACTGGAGATGACT 2031 ||| |||| ||| | || | | ||||||||||| ||||| || ||||||||| | ||| Sbjct 558 ACAATGCTGGGCCAACTCTGTGGATATTACACCCAGTGGTCAGGGTCACTGGAGGTCACT 499 Query 2032 TTCATGTTTTGTGGGAGCTTTATGACCACAGGTAAATTGATCATTTGCTACACACCACCT 2091 || |||||| ||| || ||| ||||||||||| || |||| || ||||| ||| Sbjct 498 TTTATGTTTACCGGGTCTTTCATGGCCACAGGTAAAATGCTCATAGCTTATACACCTCCT 439 Query 2092 GGTGGATC-TAGCCCAACAGATAGGATGCAAGCCATGCTAGCTACTCATGTGGTGTGGGA 2150 || || | | ||||| |||| || ||| ||||| | || ||||| | ||||| Sbjct 438 GGCGGCCCCTTACCCAA-AGATCGGGCCACAGCAATGCTGGGCACACATGTTATCTGGGA 380 Query 2151 CTTTGGGCTGCAATCTAGTATCACCATTATAATTCCTTGGATC 2193 |||||||||||||| | | ||| || |||| || |||||| Sbjct 379 TTTTGGGCTGCAATCATCTGTTACCCTTGTAATACCATGGATC 337 >seq4341 Length=257 Score = 82.4 bits (90), Expect = 4e-12 Identities = 145/204 (71%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 171 CACTTCTGTTTCCCCGGTGA-AGTTGCA-TAGACTGTACCCACGGTTGAAAGCGAT-GAA 227 ||||||||||||||||| ||| || ||||||| | | |||||||| | || | Sbjct 201 CACTTCTGTTTCCCCGGACCGAGTATCAATAGACTGCTCACGCGGTTGAAGGAGAAAGCG 142 Query 228 TCCGTTACCCGCTTAGGTACTTCGAGAAGCCTAGTATCATCTTGGAATCTTCGATGCGTT 287 ||||||| ||| || ||||||||||| | ||||| || | | ||| || | | ||| Sbjct 141 TCCGTTATCCGGCTAACTACTTCGAGAAACTTAGTAACACCATTGAAGCTGCAGAGTGTT 82 Query 288 GCGATCAGCACTCTACCCCGAGTGTAGCTTGGGTCGATGAGTCTGGACACCCCACACCGG 347 || || ||||| | |||| |||||| | |||||||||||| || || ||| || Sbjct 81 TCGCTCGGCACT-TCCCCC--GTGTAGATCAGGTCGATGAGTCACTGCAATCCCCACGGG 25 Query 348 CGA-CGTGGTCCAGGCTGCGTTGG 370 || ||||| ||||||| ||| Sbjct 24 TGACCGTGGCAGTGGCTGCGCTGG 1 >seq3031 Length=367 Score = 78.8 bits (86), Expect = 4e-11 Identities = 107/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 5752 TATGGTTTCCTTAATCTTGGGGGGACCCCCACCCACAGAATATTAATGTATAACTTCCCC 5811 || || ||| | || ||| | || | || ||||| || | | ||||| || ||||| Sbjct 85 TACGGGTTCTTGAACCTTAGTGGAAAGCCAACCCATAGGACCATGATGTACAATTTCCCT 144 Query 5812 ACAAGAGCAGGACAATGTGGAGGGGTGGTGACCACCACTGGTAAAGTGATTGGCATTCAC 5871 |||| ||||||||| |||||||| ||||| || | ||||| | ||||||||||| Sbjct 145 ACAAAAGCAGGACAGTGTGGAGGTGTGGTCACGTCAGTCGGTAAGATTGTTGGCATTCAC 204 Query 5872 GTTGGTGGCAATGGTGCG-CAAGGCTT 5897 |||| ||||| || ||| ||||| || Sbjct 205 ATTGGCGGCAACGG-GCGCCAAGGGTT 230 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23531412211952