Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_001472.1 Length=7389 Score E Sequences producing significant alignments: (Bits) Value seq643 715 0.0 seq4341 304 6e-79 seq1144 253 1e-63 seq906 206 1e-49 seq945 197 6e-47 >seq643 Length=7254 Score = 715 bits (792), Expect = 0.0 Identities = 884/1195 (74%), Gaps = 18/1195 (2%) Strand=Plus/Minus Query 123 CACCGATCATTAGCAAGCGTGGCACACCAGCCATGTTTTGATCAAGCACTTCTGTTACCC 182 || |||||| ||||| | |||||||||||| ||| ||||||||||||||||||| ||| Sbjct 7253 CAACGATCAATAGCAGGTGTGGCACACCAGTCATACCTTGATCAAGCACTTCTGTTTCCC 7194 Query 183 CGGACTGAGTATCAATAGACCGCTAACGCGGTTGAAGGAGAAAACGTTCGTTACCCGGCC 242 |||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||| || Sbjct 7193 CGGACTGAGTATCAATAGGCTGCTCGCGCGGCTGAAGGAGAAAACGTTCGTTACCCGACC 7134 Query 243 AACTACTTCGAAAAACCTAGTAACACCATGGAAGTTGCGGAGTGTTTCGCTCAGCACTAC 302 ||||||||||| || | ||||| ||||||| | | || | |||||||||||||||| || Sbjct 7133 AACTACTTCGAGAAGCTTAGTACCACCATGAACGAGGCAGGGTGTTTCGCTCAGCACAAC 7074 Query 303 CCCAGTGTAGATCAGGTCGATGAGTCACCGCGTTCCCCACGGGCGACCGTGGCGGTGGCT 362 |||||||||||||||| |||||||||| || ||||| |||||||| |||| |||||| Sbjct 7073 CCCAGTGTAGATCAGGCTGATGAGTCACTGCAACCCCCATGGGCGACCATGGCAGTGGCT 7014 Query 363 GCGTTGGCGGCCTGCCTACGGGGAAACCCGTAGGACGCTCTAATACAGACATGGTGCGAA 422 |||||||||||||||| | || |||| || | |||||||||||| | ||||||||| ||| Sbjct 7013 GCGTTGGCGGCCTGCCCATGGAGAAATCCATGGGACGCTCTAATTCTGACATGGTGTGAA 6954 Query 423 GAGTCTATTGAGCTAGTTGGTAATCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGG 482 ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 6953 GAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGG 6894 Query 483 AGCACATACCCTCAAACCAGGGGGCAGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCG 542 ||||||| | | | |||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 6893 AGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCG 6834 Query 543 ACTACTTTGGGTGTCCGTGTTTCATTTTATTCCTATACTGGCTGCTTATGGTGACAATTG 602 ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| Sbjct 6833 ACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCA 6774 Query 603 ACAGGTTGTTACCATATAGTTATTGGATTGGCCATCCGGTGACTAACAGAGCAATTATAT 662 | ||||||||||||||| ||||||||||||||||||||| ||||| |||||| | | Sbjct 6773 AAGAGTTGTTACCATATAGCTATTGGATTGGCCATCCGGTGTGCAACAGGGCAATTGTTT 6714 Query 663 ATCTCTTTGTTGGGTTTATACCACTTAGC-TTGAAAGAGGTTAAAACACTACATCTCATC 721 | || ||| |||| ||| ||||| ||| | |||| || | || || | |||| Sbjct 6713 ACCTATTTATTGGTTTTGTACCA-TTATCACTGAAGTCTGTGATCACTCTCAAATTCATT 6655 Query 722 ATTAAACTAAATACAA-CAAA-ATGGGGGCTCAAGTATCAACACAAAAGACTGGAGCACA 779 | | || || |||| |||| ||||| | || || || |||||| | || |||| Sbjct 6654 TTGACCCTCAACACAATCAAACATGGGCTCACAGGTGTCCACACAACGCTCCGGTTCACA 6595 Query 780 TGAGACCGGGCTGAAT--GCAAGCGGGAATTCCATCATCCATTACACAAACATAAACTAC 837 || | | || | | || | || | ||||| || | || || | ||| || ||| Sbjct 6594 CGAAAAC--TCTAACTCAGCTACCGAGGGTTCCACTATAAACTATACTACCATTAATTAC 6537 Query 838 TATAAAGATGC---TGCATCCAACTCAGCCAA-CAGACAGGATTTCACTCAAGACCCAGG 893 ||||||||| | ||| ||| ||| || ||| || || | || ||||||| Sbjct 6536 TATAAAGATTCCTATGCCGCCACAGCAGGTAAGCAG--AGCCTT--AAGCAGGACCCAGA 6481 Query 894 TAAATTTACTGAGCCAGTGAAGGACATTATGA-TCAAATCGATGCCAGCATTGAACTCCC 952 || ||| | | || || || ||||| | | | |||| | | | |||| || || | Sbjct 6480 CAAGTTTGCAAATCCTGTCAAAGACATCTTCACTGAAATGGCAG-CGCCATTAAAATCTC 6422 Query 953 CCTCTGCCGAAGAGTGTGGTTATAGTGACAGGGTTCGATCAATAACCCTCGGGAACTCCA 1012 | ||||| || | |||||||| ||||| |||| | | |||| | || || || | Sbjct 6421 CATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACTATTGGCAATTCTA 6362 Query 1013 CTATCACAACACAGGAGTGTGCTAATGTTGTGGTTGGGTATGGTGTGTGGCCAGAATATT 1072 | ||||| || || || || || | | ||||| ||||||| |||||| || | Sbjct 6361 CCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACT 6302 Query 1073 TGAAGGACAATGAAGCCACAGGCGAGGACCAACCAACACAACCCGACGTGGCCACATGTC 1132 |||| ||| ||||| | | |||| ||||||| | || || || | | Sbjct 6301 GTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATA 6242 Query 1133 GGTTCTACACTTTAGAGTCCGTGCAGTGGATGAAGAATTCAGCAGGTTGGTGGTGGAAGT 1192 |||| ||||| || || | |||| |||| || || |||| ||||| | Sbjct 6241 GGTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAAT 6182 Query 1193 TACCAGATGCACTTTCACAAATGGGGTTGTTTGGACAAAATATGCAGTACCACTACTTAG 1252 | || |||| | | ||| ||| | ||||| |||||| |||| ||||||| | Sbjct 6181 TCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATGCACAGTTCCACTACCTCT 6122 Query 1253 GGAGAACAGGCTACACCATCCACGTGCAGTGCAACGCATCTAAGTTTCATCAGGG 1307 | |||| | | ||| |||||||||||||| || |||||| || || || Sbjct 6121 ATCGGTCAGGGTTCTGCATTCACGTGCAGTGCAATGCTAGTAAGTTCCACCAAGG 6067 Score = 277 bits (306), Expect = 8e-71 Identities = 485/702 (69%), Gaps = 12/702 (2%) Strand=Plus/Minus Query 4009 GGCATTCCAATGGCTGAGCGCCAGAACAGTGG---TTGGCTCAAGAAGTTCACTGAAATG 4065 ||||| || |||||| || |||| ||| |||| | |||||||||| || | Sbjct 3288 GGCATACCGATGGCTCAGAAGCAGA---GTGCCTCTTGGTTAAAGAAGTTCAACGATGCG 3232 Query 4066 ACCAACGCCTGCAAGGGAATGGAGTGGATAGCTATTAAAATCCAGAAATTTATAGAATGG 4125 | | ||| ||||| | |||||||| | | |||||| |||||||| || ||| Sbjct 3231 GCGAGTGCCGCGAAGGGGCTTGAGTGGATCTCCAACAAAATCAGTAAATTTATCGATTGG 3172 Query 4126 CTCAAAGTTAAAATCCTACCAGAAGTTAAAGAAAAACATGAGTTCTTAAACAGACTTAAA 4185 ||||| | |||||| |||| | | |||||| ||| ||||| |||||| || || Sbjct 3171 CTCAAGGAGAAAATCATACCGGCTGCTAAAGAGAAAGTCGAGTTTCTAAACAATCTAAAG 3112 Query 4186 CAACTTCCGTTACTGGAGAGTCAGATTGCCACCATTGAGCAAAGTGCACCTTCTCAGAGT 4245 ||||| || ||| |||||| || ||| | | | || || ||| |||| ||| Sbjct 3111 CAACTCCCCTTATTGGAGAACCAAATTTCTAATCTCGAACAGTCAGCAGCTTCGCAGGAG 3052 Query 4246 GATCAAGAGCAATTGTTTTCTAATGTTCAGTACTTTGCACATTACTGCAGGAAATACGCA 4305 || | ||| ||||| || || ||| | || || | |||| | |||| | | Sbjct 3051 GACCTTGAGGCGATGTTTGGCAACGTGTCTTACCTGGCCCACTTCTGCCGCAAATTCCAA 2992 Query 4306 CCCCTGTATGCGGCCGAAGCAAAAAGGGTGTTCTCCCTTGAGAAGAAAATGAGTAACTAC 4365 ||||| ||||| | |||||||| ||||||| | |||| || |||| ||||| ||| ||| Sbjct 2991 CCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTAC 2932 Query 4366 ATACAGTTCAAGTCCAAATGCCGTATTGAACCTGTATGCTTGCTCTTGCACGGGAGTCCT 4425 || ||||||||| |||| ||||||||||||||||||| | | | || ||| Sbjct 2931 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCT 2872 Query 4426 GGTGCAGGGAAGTCAGTTGCCACTAACCTGATTGGGCGCTCACTCGCGGAGAAGCTTAAT 4485 ||| | ||||||||| | || || | |||| | | | || || ||| || Sbjct 2871 GGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAG--TACC 2814 Query 4486 AGCTC---TGTGTACTCTCTACCACCAGACCCAGACCATTTTGACGGTTACAAACAACAG 4542 | ||| |||||| || |||| |||||||||||||| |||||||| |||||||||||| Sbjct 2813 A-CTCCAGTGTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAG 2755 Query 4543 GCCGTTGTGATCATGGATGATTTATGCCAGAACCCAGATGGTAAGGATGTTTCTTTGTTT 4602 ||| | ||||| || ||||||| |||||||| || || || | || | ||| Sbjct 2754 ATCGTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTT 2695 Query 4603 TGTCAAATGGTCTCCAGTGTGGACTTTGTACCGCCAATGGCAGCGCTAGAAGAGAAAGGC 4662 ||||| |||||||||| ||||| ||| ||||||| |||||| | || || ||||| || Sbjct 2694 TGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGA 2635 Query 4663 ATTTTGTTCACCTCTCCCTTTGTCCTGGCTTCAACCAACGCC 4704 | | |||||||| ||||| | || || || |||||| Sbjct 2634 GTCTCATTCACCTCCAAGTTTGTGATTGCCTCCACTAACGCC 2593 Score = 219 bits (242), Expect = 2e-53 Identities = 990/1537 (64%), Gaps = 58/1537 (4%) Strand=Plus/Minus Query 5686 ATGTATATCCCAGTGGGACAAGTTACAGAGTATGGCTTCCTGAATCTGGGTGGTACACCC 5745 |||| | | ||||| ||| | || ||||||| || |||| || |||||| ||| Sbjct 1620 ATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAACCTTAGTGGTAAGCCC 1561 Query 5746 ACCAAGAGAATGCTTATGTACAACTTCCCCACGAGGGCAGGTCAGTGTGGCGGAGTGCTC 5805 || | || | | |||||||| ||||| || | ||||| |||||||| || || | Sbjct 1560 ACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTG 1501 Query 5806 ATGTCCACTGGCAAAGTTTTGGGGATCCATGTTGGCGGGAATGGTCATCAAGGCTTCTCA 5865 | || || ||||| | |||||||| |||| || || ||| ||||| |||| Sbjct 1500 ACTGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGC 1441 Query 5866 GCGGCACTTCTTAAACACTACTTCAATGATGAACAAGGAGAAATCGAGTTCATTGAAAGC 5925 || || || | ||||| ||||||||| || ||| | | || |||| Sbjct 1440 GCTGCCCTGAAGAGGGGATACTTTTGCAGTGAACAAGGTGAGATCCAATGGATG--AAGC 1383 Query 5926 TCAA--AGGAAGCAGG--GTTCCCAGTCATCAACACGCCTAGCAAAACTAAATTGGAGCC 5981 ||| | ||| | || | | | ||||||| |||| || || | || || Sbjct 1382 CCAACAAAGAAACTGGCAGGTTGAA--CATCAACGGACCTACTCGCACAAAGCTTGAACC 1325 Query 5982 AAGTGTCTTCCACCAGGTTTTTGAAGGCAATAAAGAGCCAGCAGTCCTCAGGAATGGCGA 6041 ||||||||| ||| | || || ||||||| ||||||||||||||| || | | | || Sbjct 1324 AAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTGACTAGTAAAGA 1265 Query 6042 TCCACGCCTCAGAGCCAACTTTGAGGAGGCCATATTTTCCAAATACATCGGAAATG---T 6098 ||| | || || ||||||| |||| | ||||| |||||| | || || | Sbjct 1264 CCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCT 1205 Query 6099 TAACACACACGTGGATGAATACATGCTGGAAGCTGTTGACCATTATGCTGGTCAATTGGC 6158 | | || || | || | | ||| || | |||||||| ||| | | Sbjct 1204 TCATGAACCCG---ACGAGTTTGTCAAGGAGGCGGCCTTACATTATGCCAACCAACT--C 1150 Query 6159 AACC--TTAGACATCAGCACCGAGCCA-ATGAGATTGGAAGATGC-TGTATATGGTACTG 6214 || | ||||| |||| ||| | | | ||||| |||| ||||| ||| || || || | Sbjct 1149 AAGCAGTTAGATATCAAGACC-ACCAAGATGAGCATGGAGGATGCATGT-TACGGCACAG 1092 Query 6215 AAGGCCTTGAGGCTCTTGAT-TTAACAACGAGTGCGGGCTACCCGTATGTCGCTCTGGGC 6273 | ||| || ||| | ||| || ||| | ||||| || || || || || || ||| Sbjct 1091 AGAACCTGGAAGCTATAGATCTTCACA-CAAGTGCAGGATATCCATACAGTGCACTAGGC 1033 Query 6274 ATTAAAAAGAGGGACATCCTC--TCAAAGAAGACCAGAGACCTGACCAAGCTGAAGGAGT 6331 || || || | |||||| | || || || | | || | | |||| |||| | Sbjct 1032 ATCAAGAAAAAGGACATTTTGGATCCAACAACTC--GCGATGTCAGCAAGATGAAATTCT 975 Query 6332 GCATGGACAAGTATGGCCTAAACCTACCAATGGTA----ACCTATGTGAAAGATGAACTC 6387 ||||||||||||||| | | ||||| ||| || ||||| ||||||||||| Sbjct 974 ACATGGACAAGTATGGGTTGGATCTACC----GTACTCTACTTATGTTAAAGATGAACTT 919 Query 6388 AGATCTGCAGAGAAGGTGGCGAAAGGGAAATCTAGGCTAATTGAGGCATCCAGTTTGAAT 6447 || | || ||| | ||||||||| ||| | || || || || ||| | ||| Sbjct 918 AGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAAT 859 Query 6448 GACTCCGTGGCAATGAGACAAACATTTGGCAACCTATACAAAACTTTTCACCTAAACCCA 6507 ||||| ||| ||||| |||||||| |||| || || |||| ||| || ||| Sbjct 858 GACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCA 799 Query 6508 GGGATTGTAACTGGCAGTGCCGTCGGGTGTGATCCAGATCTCTTTTGGAGCAAGATACCA 6567 || | | || || || || ||||| | |||||| | || ||||||||| ||||| Sbjct 798 GGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCA 739 Query 6568 GTGATGTT----GGATGGCCATCTCGTAGCTTTTGATTATTCTGGATATGACGCTAGCTT 6623 | | | |||| | || | || ||||| || || || ||||||||||| | Sbjct 738 ATTCTACTCCCAGGATCG----CTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCT 683 Query 6624 GAGTCCCGTATGGTT---TGC-CTGTCTAAAGCTACTGCTTGAGAAACTTGGTTACT-CG 6678 || || || ||||| || ||| | || | |||| | |||| |||| |||| || Sbjct 682 CAGCCCAGTGTGGTTCAGGGCGCTGGAGATAG-TCCTGC--GGGAAA-TTGGATACTCCG 627 Query 6679 CACAAGGAGACCAATTACATTGACTACCTGTGCAACTCCCATCACCTGTACAGGGATAAA 6738 | | | || | ||| || | || ||||||| ||||| | ||||| Sbjct 626 AAGACGCAG-TGTCTCTCATAGAAGGGATCAATCACACCCATCATGTGTACCGCAATAAA 568 Query 6739 CATTACTTTGTGCGGGGTGGCATGCCATCAGGATGCTCTGGCACAAGCATCTTCAACTCA 6798 ||| | ||| | || || ||||| ||||| ||||| ||||| ||| |||||||| Sbjct 567 ACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCG 508 Query 6799 ATGATAAATAACATCATAATCAGGACACTAATGTTGAAGGTGTACAAAGGGATCGACTTG 6858 ||||| || || ||||| || || ||||| || | || | ||||||||| || | Sbjct 507 ATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTA 448 Query 6859 GATCAATTCAGAATGATTGCTTATGGTGATGACGTGATCGCATCATATCCGTGGCCCATA 6918 ||| || | | ||| | || || || ||||| ||| | || || || | || || Sbjct 447 GATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATT 388 Query 6919 GA-TGCGTCCCTGCTTGCTGAAGCTGGTAGGGATTGTGGGTTGATCATGACACCAGCAGA 6977 || || | | | || | | || | ||| | ||| | | ||||| || || || Sbjct 387 GACTGTCT-GGAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGA 329 Query 6978 CAAAGGGGATTGCTTCAATGAAGTCACCTGGGCTAATGTCACATTTCTAAAGAG-GTATT 7036 ||| ||||| ||||| || || |||| |||| ||| || | ||||| | ||| Sbjct 328 CAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATT 269 Query 7037 TTAGAGCAGATGAACAGTACCCCTTTTTAGTGCACCCCGTCATGCCTATGAAAGACATAC 7096 | | | ||| | || | ||| ||| | | ||||| ||||| |||| || || | Sbjct 268 CTTG-CCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTC 210 Query 7097 ATGAATCAATCAGATGGACCAAGGACCCAAAGAACACCCAAGATCATGTGCGCTCGTTGT 7156 | ||||| || | |||||||| || || | || |||||||| |||||||| | | Sbjct 209 ACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCT 150 Query 7157 GCTTATTGGCCTGGCACAACGGGGAGCACGAATATGA 7193 ||||||| || |||||||||||| | | || ||||| Sbjct 149 GCTTATTAGCATGGCACAACGGGAAAGAGGAGTATGA 113 >seq4341 Length=257 Score = 304 bits (336), Expect = 6e-79 Identities = 206/231 (89%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139 GCGTGGCACACCAGCCATGTTTTGATCAAGCACTTCTGTTACCCCGGACTGAGTATCAAT 198 || |||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||| Sbjct 231 GCATGGCGCACCAGCCATGTCTTGATCAAGCACTTCTGTTTCCCCGGACCGAGTATCAAT 172 Query 199 AGACCGCTAACGCGGTTGAAGGAGAAAACGTTCGTTACCCGGCCAACTACTTCGAAAAAC 258 |||| ||| |||||||||||||||||| ||| ||||| ||||| ||||||||||| |||| Sbjct 171 AGACTGCTCACGCGGTTGAAGGAGAAAGCGTCCGTTATCCGGCTAACTACTTCGAGAAAC 112 Query 259 CTAGTAACACCATGGAAGTTGCGGAGTGTTTCGCTCAGCACTACCCCAGTGTAGATCAGG 318 |||||||||||| |||| ||| ||||||||||||| ||||| |||| |||||||||||| Sbjct 111 TTAGTAACACCATTGAAGCTGCAGAGTGTTTCGCTCGGCACTTCCCCCGTGTAGATCAGG 52 Query 319 TCGATGAGTCACCGCGTTCCCCACGGGCGACCGTGGCGGTGGCTGCGTTGG 369 |||||||||||| || |||||||||| ||||||||| ||||||||| ||| Sbjct 51 TCGATGAGTCACTGCAATCCCCACGGGTGACCGTGGCAGTGGCTGCGCTGG 1 >seq1144 Length=1302 Score = 253 bits (280), Expect = 1e-63 Identities = 811/1248 (65%), Gaps = 30/1248 (2%) Strand=Plus/Plus Query 5998 GTTTTTGAAGGCAATAAAGAGCCAGCAGTCCTCAGGAATGGCGATCCACGCCTCAGAGCC 6057 || |||||||| ||||| || |||||||| | | | | || || | | | | Sbjct 6 GTGTTTGAAGGTAATAAGGAACCAGCAGTTTTAACAAGTAAAGACCCTAGATTGGAGGTC 65 Query 6058 AACTTTGAGGAGGCCATATTTTCCAAATACATCGGAAATGTTAACACACACGTG---GAT 6114 ||||||| | ||| | |||||||| || | || |||||| ||||| | ||| Sbjct 66 GACTTTGAACAAGCCCTGTTTTCCAAGTATGTGGGCAATGTTTT---ACACGAGCCCGAT 122 Query 6115 GAATACATGCTGGAAGCTGTTGACCATTATGCTGGTCAATTGGCAACCTTAGACATCAGC 6174 ||||| || |||||| ||| || || |||| | | || ||||| | | Sbjct 123 GAATATGTGACTCAAGCTGCCCTCCACTACGCGAATCAACTTAAACAATTGGACATAAAC 182 Query 6175 ACCGAGCCA-ATGAGATTGGAAGATGCTGTATATGGTACTGAAGGCCTTGAGGCTCTTGA 6233 || ||| | ||||| |||| || || ||||| |||||| ||| ||||| |||| Sbjct 183 ACT-AGCAAGATGAGCATGGAGGAAGCGTGCTATGGCACTGAAAACCTGGAGGCAATTGA 241 Query 6234 TTTAACAACGAGTGCGGGCTACCCGTATGTCGCTCTGGGCATTAAAAAGAGGGACATCCT 6293 | || ||||| || ||||| || ||| || ||||| || || || ||||| || Sbjct 242 CCTCTGCACTAGTGCCGGGTACCCATACAGCGCCCTTGGCATCAAGAAAAGAGACATTCT 301 Query 6294 ----CTCAAAGAAGACCAGAGACCTGACCAAGCTGAAGGAGTGCATGGACAAGTATGGCC 6349 | || | ||||| || || | ||| |||| | ||||| || || || | Sbjct 302 TGACCCCACA----ACCAGGGATGTGTCTAAGATGAAATTCTATATGGATAAATACGGGC 357 Query 6350 TAAACCTACCAATGGTAACCTATGTGAAAGATGAACTCAGATCTGCAGAGAAGGTGGCGA 6409 || | || ||| ||||||||||| ||||| || || || || || | || Sbjct 358 TAGATCTGCCATACTCTACCTATGTGAAGGATGAGCTTAGGTCCCTGGATAAAATCAAGA 417 Query 6410 AAGGGAAATCTAGGCTAATTGAGGCATCCAGTTTGAATGACTCCGTGGCAATGAGACAAA 6469 |||| || || | | || ||||| || ||||||||||| || | ||| Sbjct 418 AAGGAAAGTCACGCTTGATAGAGGCTAGTAGCTTGAATGACTCTGTCTACCTCAGAATGG 477 Query 6470 CATTTGGCAACCTATACAAAACTTTTCACCTAAACCCAGGGATTGTAACTGGCAGTGCCG 6529 | ||||| |||| || | | ||||| ||||| || | ||| |||||| || | Sbjct 478 CTTTTGGGCACCTTTATGAGGCGTTTCATGCTAACCCTGGCACTGTGACTGGCTCAGCAG 537 Query 6530 TCGGGTGTGATCCAGATCTCTTTTGGAGCAAGATACCAGTGATGTTGGATGGCCATCTCG 6589 | || ||| | || || | ||||||||||| |||| | || || ||| ||| Sbjct 538 TGGGTTGTAACCCGGACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGGTCGCTCT 597 Query 6590 TAGCTTTTGATTATTCTGGATATGACGCTAGCTTGAGTCCCGTATGGTTTGCCTGTCTAA 6649 | || ||||| || || |||||||| ||||| | || || |||||||| | || Sbjct 598 TTGCCTTTGACTACTCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGGGCTTTAG 657 Query 6650 AGCTACTGCTTGAGAAACTTGGTTACTCGCACAAGGAGACCAATTAC---ATTGACTACC 6706 | | || | | | |||| || || | |||| || | | || || Sbjct 658 AAGTTGTGTTACGGGAGATTGGGTATTCAGA---GGAGGCCGTGTCCCTAATAGAAGGGA 714 Query 6707 TGTGCAACTCCCATCACCTGTACAGGGATAAACATTACTTTGTGCGGGGTGGCATGCCAT 6766 | | || |||| || |||| || | ||| |||| ||| | ||||| ||||| | Sbjct 715 TCAACCACACCCACCATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCCCT 774 Query 6767 CAGGATGCTCTGGCACAAGCATCTTCAACTCAATGATAAATAACATCATAATCAGGACAC 6826 ||||||| ||||| || |||||| || |||||||| || |||||||| ||||| || | Sbjct 775 CAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAACCC 834 Query 6827 TAATGTTGAAGGTGTACAAAGGGATCGACTTGGATCAATTCAGAATGATTGCTTATGGTG 6886 | || | || | || || || ||| ||||| | || | ||| | || ||||| | Sbjct 835 TTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTATGGGG 894 Query 6887 ATGACGTGATCGCATCATATCCGTGGCCCATAGATGCGTCCCT---GCTTGCTGAAGCTG 6943 | || ||| | || || || | ||||| ||| | ||| | | ||| | ||| Sbjct 895 ACGATGTGCTGGCTAGTTACCCCTTTCCCATTGAT---TGCCTTGAGTTGGCTAAGACTG 951 Query 6944 GTAGGGATTGTGGGTTGATCATGACACCAGCAGACAAAGGGGATTGCTTCAATGAAGTCA 7003 | | || | ||| |||| |||||| || ||||||||| || ||||||||||| | Sbjct 952 GCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAAGTAA 1011 Query 7004 CCTGGGCTAATGTCACATTTCTAAAGAG-GTATTTTAGAGCAGATGAACAGTACCCCTTT 7062 | |||| |||| || || || ||||| | ||| | | |||| | || | || || Sbjct 1012 CATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGC-CAGACCACCAATTTCCATTC 1070 Query 7063 TTAGTGCACCCCGTCATGCCTATGAAAGACATACATGAATCAATCAGATGGACCAAGGAC 7122 ||| | ||||| ||||| |||| ||| || |||||||| || ||||||| || ||| Sbjct 1071 TTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAAGAC 1130 Query 7123 CCAAAGAACACCCAAGATCATGTGCGCTCGTTGTGCTTATTGGCCTGGCACAACGGGGAG 7182 | |||||||||||||| |||||||| |||| | ||||| |||||||| || || Sbjct 1131 GCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGTAAG 1190 Query 7183 CACGAATATGAGGAGTTCATCCGCAAAATTAGAAGCGTCCCAGTTGGA 7230 | ||||||||| |||| | | ||||||| || ||||||||| Sbjct 1191 GATGAATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTTGGA 1238 >seq906 Length=2416 Score = 206 bits (228), Expect = 1e-49 Identities = 936/1460 (64%), Gaps = 34/1460 (2%) Strand=Plus/Plus Query 3292 TTTGGACAACAGTCAGGGGCTGTCTACGTAGGCAACTACAGAGTGGTGAATAGACACCTC 3351 || || || ||||| ||||| ||||||| ||||||| |||||||| ||| | |||||| Sbjct 63 TTCGGCCAGCAGTCCGGGGCCATCTACGTGGGCAACTTTAGAGTGGTTAATCGTCACCTC 122 Query 3352 GCCACCCGCGAGGACTGGCAGCGGTGCGTGTGGGAAGATTACAACAGAGATCTTCTTGTG 3411 || || | | |||||| | ||| |||||||| | | | || || | ||| Sbjct 123 GCTACTCATAATGACTGGGCGAACCTCGTCTGGGAAGACAGCTCCCGCGACCTATTAGTG 182 Query 3412 AGTACAACCACGGCACATGGATGCGATATCATAGCCAGGTGTCAGTGCACAACCGGGGTT 3471 | ||||| || || || || |||| || || | ||| | || ||| || || Sbjct 183 TCGTCTACCACCGCTCAGGGCTGTGATACAATTGCACGTTGTGACTGTCAAACAGGAGTG 242 Query 3472 TATTTCTGTGCGTCAAGGAATAAGCACTATCCAGTTTCCTTTGAGGGGCCGGGTCTTGTG 3531 |||| || || | || |||||||||||||| |||| || | || | Sbjct 243 TATTATTGCAATTCCAAGAGAAAGCACTATCCAGTCAGCTTTTCTAAACCCAGCCTCATA 302 Query 3532 GAGGTTCAAGAGAGTGAGTACTATCCAAAGAGGTACCAATCCCACGTGCTTTTAGCGGCA 3591 | || ||| || ||||| || || || |||||||| ||| || | | || || Sbjct 303 TATGTGGAAGCTAGCGAGTATTACCCTGCTAGATACCAATCGCACCTGATGCTTGCAGCG 362 Query 3592 GGCTTTTCCGAACCAGGGGATTGTGGTGGAATCCTAAGGTGCGAACATGGTGTCGTGGGC 3651 ||| || || || || || || || || ||| ||||||| |||||||||| || || Sbjct 363 GGCCACTCTGAGCCCGGCGACTGCGGAGGCATCTTAAGGTGTCAACATGGTGTAGTTGGT 422 Query 3652 ATTGTAACTATGGGAGGGGAGGGTGTTGTTGGCTTTGCCGACGTACGCGACCTGCTGTGG 3711 || || | | ||| || | || | ||||| ||||| || || | || || ||||| Sbjct 423 ATAGTGTCCACGGGTGGCAACGGGCTCGTTGGATTTGCTGATGTGAGGGATCTCTTGTGG 482 Query 3712 TTAGAAGATGATGCAATGGAGCAGGGGGTCAAAGATTACGTAGAGCAACTTGGAAACGCC 3771 ||||| || || || |||||||| || || || ||| | || || || |||| Sbjct 483 TTAGATGAAGAGGCTATGGAGCAAGGTGTGTCCGACTACATTAAGGGGCTCGGTGACGCG 542 Query 3772 TTTGGGTCAGGATTCACTAACCAAGTCTGTGAACAGG-----TTAA--CCTTTTGAAAGA 3824 ||||| |||| |||||| | || |||| |||| | || |||| ||| | Sbjct 543 TTTGGAACAGGCTTCACTGA---AG-CTGTATCCAGGGAAGTTGAAGCCCTTAGGAACCA 598 Query 3825 GTCCCTAGTGGGCCAAGACTCCATCT-TAGA-AAAATCTCTGAAAGCCCTAGTAAAAATT 3882 ||| | || || | | | | || |||||| || || ||| | || | Sbjct 599 ---CCTCATAGGATCTGA-TGGAGCGGTTGAGAAAATC-CTAAAGAACCTTATTAAGCTG 653 Query 3883 GTGTCAGCCTTGGTGATAGTCGTGAGGAACCACGACGATTTAATAACAGTGACTGCAACA 3942 | ||||| || || || || | |||| | | | ||| | | || | || ||||| Sbjct 654 ATTTCAGCGTTAGTAATTGTGATCAGGAGCGATTATGATATGGTCACCCTCACAGCAACT 713 Query 3943 CTTGCCCTCATTGGCTGCACCTCCTCACCATGGAGATGGCTTAA-GCAAAAGGTGTCCCA 4001 | ||||| ||||| || | || ||| ||| |||| || || | | Sbjct 714 TTAGCCCTGATTGGTTGTCACGGAAGTCCTTGGGCTTGGATTAAAGCCAAGACAGCATCC 773 Query 4002 GTACTATGGCATTCCAATGGCTGAGCGCCAGAACAGTGGTTGGCTCAAGAAGTTCACTGA 4061 | || || || || || || || |||| | |||||| ||||| || | ||| Sbjct 774 ATCTTA-GGTATCCCCATCGCCCAGAAGCAGAGTGCTTCTTGGCTAAAGAAATTTAATGA 832 Query 4062 AATGACCAACGCCTGCAAGGGAATGGAGTGGATAGCTATTAAAATCCAGAAATTTATAGA 4121 ||| | | ||| |||||| | || |||||| | | ||||| || || || || Sbjct 833 TATGGCGAGTGCCGCCAAGGGTTTAGAATGGATATCCAACAAAATTAGTAAGTTCATTGA 892 Query 4122 ATGGCTCAAAGTTAAAATCCTACCAGAAGTTAAAGAAAAACATGAGTTCTTAAACAGACT 4181 ||||||| | || || | |||| || || || ||| || || |||| || | Sbjct 893 CTGGCTCAGGGAGAAGATTGTTCCAGCAGCCAAGGAGAAAGCAGAATTTTTAACCAATTT 952 Query 4182 TAAACAACTTCCGTTACTGGAGAGTCAGATTGCCACCATTGAGCAAAGTGCACCTTCTCA 4241 || ||| | || | | |||| ||||| | | | | ||||| || | || || Sbjct 953 GAAGCAATTGCCACTGTTAGAGAACCAGATCACGAACTTAGAGCAGTCCGCTGCCTCACA 1012 Query 4242 -GAGTGATCAAGA-GCAATTGTTTTCTAATGT-TCAGTACTTTGCACATTACTGCAGGAA 4298 ||| || | || || || |||| ||||| ||| ||| | || |||| ||| | || Sbjct 1013 AGAG-GACCTTGAAGCTAT-GTTTGGGAATGTGTCA-TACCTCGCCCATTTCTGTCGCAA 1069 Query 4299 ATACGCACCCCTGTATGCGGCCGAAGCAAAAAGGGTGTTCTCCCTTGAGAAGAAAATGAG 4358 | | ||| | || || | ||||| || | || | || ||||||| ||||| Sbjct 1070 GTTCCAACCATTATACGCCACGGAAGCTAAGCGAGTCTATGTTCTAGAGAAGAGAATGAA 1129 Query 4359 TAACTACATACAGTTCAAGTCCAAATGCCGTATTGAACCTGTATGCTTGCTCTTGCACGG 4418 |||||||| ||||||||| |||| |||||||||||||||||| | || | || Sbjct 1130 CAACTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGG 1189 Query 4419 GAGTCCTGGTGCAGGGAAGTCAGTTGCCACTAACCTGATTGGGCGC-TCACTCGCGGAGA 4477 || || | || ||||| |||| || | |||| || ||| | || || | Sbjct 1190 CTCACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCA-TAGCAGACA 1248 Query 4478 AGCTTAATAGCTCT---GTGTACTCTCTACCACCAGACCCAGACCATTTTGACGGTTACA 4534 || | | |||| |||||||| || ||||||||||| |||||||||||||| || | Sbjct 1249 AGTATCA---CTCTAGTGTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATA 1305 Query 4535 AACAACAGGCCGTTGTGATCATGGATGATTTATGCCAGAACCCAGATGGTAAGGATGTTT 4594 |||| || | || | ||||||||| | || || ||||| || || || || | | Sbjct 1306 AACAGCAAGTGGTCACAGTTATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGT 1365 Query 4595 CTTTGTTTTGTCAAATGGTCTCCAGTGTGGACTTTGTACCGCCAATGGCAGCGCTAGAAG 4654 | || ||||| || ||||| |||| ||||| ||| | || |||||||| | || |||| Sbjct 1366 CATTATTTTGCCAGATGGTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAG 1425 Query 4655 AGAAAGGCATTTTGTTCACCTCTCCCTTTGTCCTGGCTTCAACCAACGCCGGCTCTATTA 4714 | || || ||| ||||| ||| ||||| | || || |||||||| || |||| Sbjct 1426 AAAAGGGAGTTTCCTTCACATCTAAATTTGTTATCGCATCCACCAACGCTAGCAACATTA 1485 Query 4715 ATGCTCCAACAGTTTCAGAC 4734 | || ||||| |||||| Sbjct 1486 TAGTGCCTACAGTGTCAGAC 1505 >seq945 Length=2018 Score = 197 bits (218), Expect = 6e-47 Identities = 397/573 (69%), Gaps = 18/573 (3%) Strand=Plus/Minus Query 547 CTTTGGGTGTCCGTGTTTCATTTTATTCCTATACTGGCTGCTTATGGTGACAATTGACAG 606 || |||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||| Sbjct 2018 CTCTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATT-ACAG 1960 Query 607 G-TTGTTACCATATAGTTATTGGATTGGCCATCCGGTGACTAACAGAGCAATTATATATC 665 |||||||||||||| ||||||||||||||||||||| || ||||| |||||||| | Sbjct 1959 AATTGTTACCATATAGCTATTGGATTGGCCATCCGGTGTGCAATAGAGCTATTATATACC 1900 Query 666 TCTTTGTTGGGTTTATACCACTTAGCTTGAAAGAGGTTAAAACACTACATCTCATCATTA 725 | |||||||| ||| | ||||| | ||| ||| | | || || | | || | | Sbjct 1899 TATTTGTTGGCTTTGTGCCACTAACCTTAAAATCTATAACCACCCTCGACTTTATACTAA 1840 Query 726 AACTAAATACA-ACAAA-ATGGGGGCTCAAGTATCAACACAAAAGACTGGAGCACATGAG 783 || |||||| |||| ||||| | || || || || || | || | || ||| Sbjct 1839 CCCTCAATACAGTCAAACATGGGCTCACAGGTGTCCACTCAGCGATCCGGCTCCCACGAG 1780 Query 784 ACCGGGCTGAATGCAAGC--GGGAA--TTCCATCATCCATTACACAAACATAAACTACTA 839 | | ||| | ||| ||| |||| ||| ||||||| | ||| ||||| || Sbjct 1779 AAC---TCCAATTC-AGCTACAGAAGGCTCCACCATTAATTACACTACCATCAACTATTA 1724 Query 840 TAAAGA-TGCTGCATCCAAC-TCAGCCAACAGACAGGATTTCACTCAAGACCCAGGTAAA 897 ||||| | || || | | |||| | |||| ||| |||||||| | ||| Sbjct 1723 CAAAGACTCCT--ATGCTGCGACAGCGGGTAAACAGAGCCTCAAACAAGACCCTGATAAG 1666 Query 898 TTTACTGAGCCAGTGAAGGACATTATGA-TCAAATCGATGCCAGCATTGAACTCCCCCTC 956 ||| || | || || || |||||| | | | |||| | || | || |||| || || || Sbjct 1665 TTTGCTAACCCTGTCAAAGACATTTTCACTGAAATGGCTG-CGCCACTGAAGTCTCCATC 1607 Query 957 TGCCGAAGAGTGTGGTTATAGTGACAGGGTTCGATCAATAACCCTCGGGAACTCCACTAT 1016 || |||| |||||||| ||||| | || | | | ||| | ||||||||||| || Sbjct 1606 CGCTGAAGCTTGTGGTTACAGTGATCGCGTGGCACAACTCACCATTGGGAACTCCACCAT 1547 Query 1017 CACAACACAGGAGTGTGCTAATGTTGTGGTTGGGTATGGTGTGTGGCCAGAATATTTGAA 1076 || ||||||||| || || | | || || || |||| |||||| ||| | Sbjct 1546 TACTACACAGGAGGCGGCAAACATCATAGTCGGTTACGGTGAGTGGCCCTCATACTGCTC 1487 Query 1077 GGACAATGAAGCCACAGGCGAGGACCAACCAAC 1109 || | || ||||||| | |||| ||||||| Sbjct 1486 TGATGACGACGCCACAGCGGTGGACAAACCAAC 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23528212400664