Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_001490.1 Length=7212 Score E Sequences producing significant alignments: (Bits) Value seq1144 145 4e-31 seq643 138 5e-29 seq906 87.8 8e-14 >seq1144 Length=1302 Score = 145 bits (160), Expect = 4e-31 Identities = 289/425 (68%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 6632 GGTGGCATGCCCTCAGGGTGTTCAGGAACCAGCATATTCAATTCCATGATCAACAACATA 6691 ||||| ||||||||||| ||||| || || ||| || ||||| |||||||||||||| Sbjct 762 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 821 Query 6692 ATCATTAGGAC---TTTGATATTAGATGCATATAAAGGAATAGATTTAGACAAACTTAAA 6748 ||||| || || |||||| | | | ||| |||||||| | || | | || Sbjct 822 ATCATCAGAACCCTTTTGATCAAAACT---TTTAAGGGAATAGACCTGGATGAGTTGAAC 878 Query 6749 ATCTTAGCTTACGGTGATGATTTGATTGTTTCTTATCCTTATGAACTGGATCCACAAGTG 6808 || | || || || || ||| || | | | ||| || | | | ||| | | | Sbjct 879 ATGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAG 938 Query 6809 TTGGCAACTCTTGGTAAAAATTATGGACTAACCATCACACCCCCAGACAAATCTGAAACT 6868 ||||| | ||| ||| | ||||| | ||||| || || |||||||||| | || Sbjct 939 TTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATC--ACCCT 996 Query 6869 TTTACAA--AAATGACATGGGAAAACTTGACATTTTTAAAGAGATACTTCAAGCCTGATC 6926 || ||| || | ||||||||||| || || | |||||| ||| ||| || | Sbjct 997 GTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACC 1056 Query 6927 AACAATTTCCCTTTTTGGTTCACCCAGTTATGCCCATGAAAGATATACATGAGTCAATCA 6986 | |||||||| || || ||||||| |||||||||| ||| || ||||| || || Sbjct 1057 ACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTC 1116 Query 6987 GATGGACAAAGGATCCTAAAAACACACAGGATCACGTCCGATCATTATGCATGTTAGCAT 7046 ||||||| || || | ||||| || |||||||| || || | || |||| |||| Sbjct 1117 GATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCAT 1176 Query 7047 GGCAC 7051 ||||| Sbjct 1177 GGCAC 1181 >seq643 Length=7254 Score = 138 bits (152), Expect = 5e-29 Identities = 195/265 (74%), Gaps = 12/265 (5%) Strand=Plus/Minus Query 348 CCCCACGGGTGACCGTGTCCTAGCCTGCGT-GGCGGCCAACCCAGCTT---ATGC-TGGG 402 ||||| ||| |||| || | | |||||| ||||||| |||| || | |||| Sbjct 7039 CCCCATGGGCGACCATGGCAGTGGCTGCGTTGGCGGCCTGCCCATGGAGAAATCCATGGG 6980 Query 403 ACGCCCTTTTAAGGACATGGTGTGAAGACTCGCATGTGCTTGGTTGTGAGTCCTCCGGCC 462 |||| || | ||||||||||||||| | || ||| | | || |||||||||||| Sbjct 6979 ACGCTCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGT-AGTCCTCCGGCC 6921 Query 463 CCTGAATGCGGCTAACCTTAACCCTAGAGCCTTATGC-CACGATCCAGTGGTTGTAAGGT 521 ||||||||||||||| | |||| |||| |||| ||||| ||||||| || || Sbjct 6920 CCTGAATGCGGCTAATCCTAACTGCGGAGCAC-ATGCTCACGAACCAGTGGGTGGTGTGT 6862 Query 522 CGTAATGAGCAATTCCGGGACGGGACCGACTACTTTGGGTGTCCGTGTTTCTCATTTTTC 581 ||||| | |||| || | ||| ||||||||||||||||||||||||||| || ||| Sbjct 6861 CGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTC 6802 Query 582 TTCATATTG---TCTTATGGTCACA 603 || |||||| |||||||| ||| Sbjct 6801 TT-ATATTGGCTGCTTATGGTGACA 6778 Score = 132 bits (146), Expect = 2e-27 Identities = 286/423 (68%), Gaps = 6/423 (1%) Strand=Plus/Minus Query 6632 GGTGGCATGCCCTCAGGGTGTTCAGGAACCAGCATATTCAATTCCATGATCAACAACATA 6691 || || ||||||||||| || ||||| ||| ||| ||||| || ||||||||||| || Sbjct 552 GGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATC 493 Query 6692 ATCATTAGGACTTTGAT-ATTAGATGCATATAAAGGAATAGATTTAGACAAACTTAAAAT 6750 || ||||| || | | |||| | ||| ||||| |||||| |||| |||| || || Sbjct 492 ATTATTAGAACACTCCTGATTA-AAACATTCAAAGGGATAGATCTAGATGAACTGAACAT 434 Query 6751 CTTAGCTTACGGTGATGATTTGATTGTTTCTTATCCTTATGAACTGGATCCACAAGTGTT 6810 | || ||||| |||||| || | | | ||| || | | | || | | ||| Sbjct 433 GGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTGGAGTT 374 Query 6811 GGCAACTCTTGGTAAAAATTATGGACTAACCATCACACCCCCAGACAAATCTGAAACT-- 6868 ||||| || || | ||||| ||||| || || || | ||||| || | || Sbjct 373 GGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTC--ACCCTGC 316 Query 6869 TTTACAAAAATGACATGGGAAAACTTGACATTTTTAAAGAGATACTTCAAGCCTGATCAA 6928 |||| | | |||||||| || || || || |||||| ||| ||||||||| Sbjct 315 TTTAATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCAT 256 Query 6929 CAATTTCCCTTTTTGGTTCACCCAGTTATGCCCATGAAAGATATACATGAGTCAATCAGA 6988 ||||| || ||| | | ||||| ||||| |||| || || || || || || | Sbjct 255 CAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGT 196 Query 6989 TGGACAAAGGATCCTAAAAACACACAGGATCACGTCCGATCATTATGCATGTTAGCATGG 7048 ||||| || ||| | || || || |||||||| || || | ||| | ||||||||| Sbjct 195 TGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGG 136 Query 7049 CAC 7051 ||| Sbjct 135 CAC 133 >seq906 Length=2416 Score = 87.8 bits (96), Expect = 8e-14 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 4388 GTATATTCACTTCCACCAGATCCCAAGCACTTTGATGGTTATCAGCAACAGGAAGTTGTG 4447 || || |||||||||||||| || | || ||||| || ||| ||||| |||| || Sbjct 1263 GTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTAT---AAACAGCAAGTGGTC 1319 Query 4448 A---TTATGGATGATCTGAACCAAAATCCAGATGGACAGGATATAAGCATGTTTTGTCAA 4504 | |||||||||||||| ||||| || || || | || || | ||||| || Sbjct 1320 ACAGTTATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGTCATTATTTTGCCAG 1379 Query 4505 ATGGTTTCTTCAGTGGATTTCTTGCCTCCAATGGCTAGTTTAGATAACAAGGGCATGTTA 4564 ||||| || | |||||||| | || ||||||||| | | || | ||||| | | Sbjct 1380 ATGGTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGGAGTTTCC 1439 Query 4565 TTCACCAGTAATTTTGTTCTAGCCTCCACAAATTCTAACA 4604 ||||| ||| |||||| | || ||||| || ||| || Sbjct 1440 TTCACATCTAAATTTGTTATCGCATCCACCAACGCTAGCA 1479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22961845802688