Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_001617.1
Length=7152
Score E
Sequences producing significant alignments: (Bits) Value
seq643 109 3e-20
>seq643
Length=7254
Score = 109 bits (120), Expect = 3e-20
Identities = 145/200 (73%), Gaps = 1/200 (1%)
Strand=Plus/Minus
Query 397 CTAATTATTGACAAGGTGTGAAGAGCCGCGTGTGCTCAGTGTGCTTCCTCCGGCCCCTGA 456
|||||| | |||| ||||||||||||| || ||| || |||||||||||||||
Sbjct 6974 CTAATTCT-GACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGA 6916
Query 457 ATGTGGCTAACCTTAACCCTGCAGCCGTTGCCCATAATCCAATGGGTTTGCGGTCGTAAT 516
||| |||||| | |||| | ||| ||| || | ||| ||||| |||||||
Sbjct 6915 ATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAAC 6856
Query 517 GCGTAAGTGCGGGATGGGACCAACTACTTTGGGTGTCCGTGTTTCCTGTTTTTCTTTTGA 576
| | || | | || ||| ||||||||||||||||||||||||| || ||||| |
Sbjct 6855 GGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATAT 6796
Query 577 TTGCATTTTATGGTGACAAT 596
| || |||||||||||||
Sbjct 6795 TGGCTGCTTATGGTGACAAT 6776
Score = 82.4 bits (90), Expect = 3e-12
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 6195 TACTTTTCTGAAAGATGAACTTAGAAAGAAGGAAAAAATAAAAGATGGAAAGACTAGAGT 6254
||||| | | |||||||||||||| | || || || || | || ||| || | |
Sbjct 940 TACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCT 881
Query 6255 CATAGAAGCTAATAGTGTGAATGATACTGTGTTATTCAGAAGTGTATTTGGAAATCTTTT 6314
||||||||| | || | ||||| | |||| || |||| |||||| | ||||
Sbjct 880 CATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTA 821
Query 6315 CTCTGCTTTCCACAAAAACCCAGGTATAGTCACTGGTTCAGCAGTAGGGTGTGACCCTGA 6374
||||||||| || ||||||| | |||| |||||||| || ||||| |||| ||
Sbjct 820 TGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGA 761
Query 6375 AGTATTCTGG 6384
|| ||||||
Sbjct 760 TGTGTTCTGG 751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 22769857125408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |