Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_001617.1 Length=7152 Score E Sequences producing significant alignments: (Bits) Value seq643 109 3e-20 >seq643 Length=7254 Score = 109 bits (120), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 397 CTAATTATTGACAAGGTGTGAAGAGCCGCGTGTGCTCAGTGTGCTTCCTCCGGCCCCTGA 456 |||||| | |||| ||||||||||||| || ||| || ||||||||||||||| Sbjct 6974 CTAATTCT-GACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGA 6916 Query 457 ATGTGGCTAACCTTAACCCTGCAGCCGTTGCCCATAATCCAATGGGTTTGCGGTCGTAAT 516 ||| |||||| | |||| | ||| ||| || | ||| ||||| ||||||| Sbjct 6915 ATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAAC 6856 Query 517 GCGTAAGTGCGGGATGGGACCAACTACTTTGGGTGTCCGTGTTTCCTGTTTTTCTTTTGA 576 | | || | | || ||| ||||||||||||||||||||||||| || ||||| | Sbjct 6855 GGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATAT 6796 Query 577 TTGCATTTTATGGTGACAAT 596 | || ||||||||||||| Sbjct 6795 TGGCTGCTTATGGTGACAAT 6776 Score = 82.4 bits (90), Expect = 3e-12 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 6195 TACTTTTCTGAAAGATGAACTTAGAAAGAAGGAAAAAATAAAAGATGGAAAGACTAGAGT 6254 ||||| | | |||||||||||||| | || || || || | || ||| || | | Sbjct 940 TACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCT 881 Query 6255 CATAGAAGCTAATAGTGTGAATGATACTGTGTTATTCAGAAGTGTATTTGGAAATCTTTT 6314 ||||||||| | || | ||||| | |||| || |||| |||||| | |||| Sbjct 880 CATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTA 821 Query 6315 CTCTGCTTTCCACAAAAACCCAGGTATAGTCACTGGTTCAGCAGTAGGGTGTGACCCTGA 6374 ||||||||| || ||||||| | |||| |||||||| || ||||| |||| || Sbjct 820 TGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGA 761 Query 6375 AGTATTCTGG 6384 || |||||| Sbjct 760 TGTGTTCTGG 751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22769857125408