Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_001859.1 Length=7414 Score E Sequences producing significant alignments: (Bits) Value seq1144 219 2e-53 seq643 203 2e-48 seq906 178 6e-41 seq945 120 1e-23 >seq1144 Length=1302 Score = 219 bits (242), Expect = 2e-53 Identities = 669/1017 (66%), Gaps = 34/1017 (3%) Strand=Plus/Plus Query 6279 CTTGAGGCACTTGATCTTGGAACTAGTGCGAGCTACCCGTACGTTGCAATGGGCATCAAG 6338 || |||||| |||| || | |||||||| | ||||| ||| || | ||||||||| Sbjct 228 CTGGAGGCAATTGACCTCTGCACTAGTGCCGGGTACCCATACAGCGCCCTTGGCATCAAG 287 Query 6339 AAAAGAGATATT-TTGAATAAAGAGACCAGGGATGTCACTAAGATGCAAGAGTGCATAGA 6397 |||||||| ||| |||| | | ||||||||||| |||||||| || | || || Sbjct 288 AAAAGAGACATTCTTGACCCCACA-ACCAGGGATGTGTCTAAGATGAAATTCTATATGGA 346 Query 6398 TAAGTATGGTTTAAATCTACCCATGGTC-ACCTATGTCAAGGATGAACTCAGGGCGCCAG 6456 ||| || || || |||| |||| || |||||||| |||||||| || ||| | | | Sbjct 347 TAAATACGGGCTAGATCT-GCCATACTCTACCTATGTGAAGGATGAGCTTAGGTCCCTGG 405 Query 6457 ATAAGATCAGGAAAGGAAAAAGCCGTTTGATAGAGGCATCTAGCTTGAATGATTCAG--T 6514 |||| |||| ||||||||| || ||||||||||| |||||||||||| || | | Sbjct 406 ATAAAATCAAGAAAGGAAAGTCACGCTTGATAGAGGCTAGTAGCTTGAATGACTCTGTCT 465 Query 6515 AGCCATGCGGTGCTACTTTGGGAACCTCTACAAGGTTTTCCACACCAACCCTGGAACCAT 6574 | | | ||| |||||| |||| || ||| || || | |||||||| || | Sbjct 466 ACCTCAGAATGGCT--TTTGGGCACCTTTATGAGGCGTTTCATGCTAACCCTGGCACTGT 523 Query 6575 CTCCGGCTGTGCCGTTGGATGCGACCCTGAAACCTTCTGGAGCAAGATCCCAGTGATGAT 6634 | |||| || || || || |||| || || |||||||| | || | || | Sbjct 524 GACTGGCTCAGCAGTGGGTTGTAACCCGGACGTGTTTTGGAGCAAACTACCGATTCTGCT 583 Query 6635 GGATGGTGAGCTTTTTGGCTTTGATTATACTGCATATGATGCTAGCCTGTCTCCCATGTG 6694 | ||| ||| |||| |||||| || | | |||||||||||| || || | || Sbjct 584 GCCTGGGTCGCTCTTTGCCTTTGACTACTCAGGATATGATGCTAGTCTCAGCCCGGTATG 643 Query 6695 GTTCCATGCCCTGGCAGAAGTCCTTAGACG---GATTGG--ATT-TGTTGAGTGCAAGCA 6748 ||| || | | | |||||| | ||| |||||| ||| | ||| | | Sbjct 644 GTT-CAGGGCTT--TAGAAGTTGTGTTACGGGAGATTGGGTATTCAGAGGAGGCCGTGTC 700 Query 6749 CTTTATTGATCAACTTTGCTGCAGCCACCACCTTTATATGGATAAGCACTATTATGTGGT 6808 | | || || | | || |||||| | ||| | | || || | ||| | Sbjct 701 CCTAATAGAAGGGATCAACCACACCCACCATGTGTATCGGAACAAAACATACTGTGTACT 760 Query 6809 TGGGGGCATGCCTTCTGGCTGCTCTGGCACCTCCATCTTCAATTCTATGATTAACAACCT 6868 ||| || ||||| || || || ||||| || |||||||| ||||| ||||| |||||| | Sbjct 761 TGGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACAT 820 Query 6869 AATCATCCGCACTCTTGTGCTCACAGTTTATAAAAATATTGATTTGGATGATCTTAAGAT 6928 |||||| | || ||| || ||| | || ||| || || ||||||| | || || Sbjct 821 CATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACAT 880 Query 6929 AATAGCCTACGGGGATGACGTGCTCGCGTCGTACCCGTATGAGATTGATGCCAGCCT--- 6985 | ||||| ||||| || ||||| || ||||| | | |||||| |||| Sbjct 881 GGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGAT---TGCCTTGA 937 Query 6986 CTTGGCAGAAGCTGGTAAAAGCTTTGGTCTAATCATGACTCCACCAGATAAATCTGCGGA 7045 ||||| | |||| ||| | |||| | | ||||||||| |||| ||||| | Sbjct 938 GTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACC--- 994 Query 7046 GTTTGTCA---AATTAACCTGGGATAACGTGACCTTTTTGAAGAGGAAGTTCGTGCGTGA 7102 | | ||| || |||| ||||| || | ||||| ||||||| ||| ||| || Sbjct 995 CTGTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGA 1054 Query 7103 TGCACGGTACCCTTTCCTTGTACATCCGGTCATGGACATGTCGAACATCCATGAGTCCAT 7162 | | || ||| | | || || ||| |||| | |||||||| ||||| Sbjct 1055 CCACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCAT 1114 Query 7163 TCGGTGGACGAAAGATCCCAGGCATACTGAAGACCATGTCCGCTCACTTTGCCTATTGGC 7222 ||| ||||| ||||| | | | || |||| || || ||||| || || || ||||| Sbjct 1115 TCGATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGC 1174 Query 7223 CTGGCATTGTGGCGAGGAAGAATACAACGAATTTGT---TACAA--AGATCCGTTCC 7274 ||||| ||| |||| ||||| | | ||||| | ||| ||||| ||||| Sbjct 1175 ATGGCACAATGGTAAGGATGAATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCC 1231 >seq643 Length=7254 Score = 203 bits (224), Expect = 2e-48 Identities = 941/1470 (64%), Gaps = 49/1470 (3%) Strand=Plus/Minus Query 5785 TGAACCTTGCTGGCAGGCCAACACATAGAGTTTTGATGTATGAATTCCCCACCAAGGCAG 5844 |||||||| ||| | ||| || || || | ||||||| | ||||| || || |||| Sbjct 1580 TGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAG 1521 Query 5845 GCCAATGCGGTGGTGTGGTTATTAGCATGGGTAAGATAGTGGGTGTCCACGTAGGAGGTA 5904 | || || |||||||| || | | | ||||||| | | || ||||| | || || | Sbjct 1520 GACAGTGTGGTGGTGTTGTGACTGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCA 1461 Query 5905 ACGGTGCCCAAGGTTTTGCCGCCTCCCTTCTACGCAGGTACTTTA-CAGCAGAACAAGGA 5963 ||||| |||||||| ||| |||| | | |||||| ||| |||||||| Sbjct 1460 ACGGTAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGT-GAACAAGGT 1402 Query 5964 CAAATTGAATATATCGAGAAGAGTAAAGA---TGCCGGGTACCCCGTGATCAATGCACCC 6020 | || ||| || || | ||||| || | ||| | ||||| | ||| Sbjct 1401 GAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAAC---ATCAACGGACCT 1345 Query 6021 ACCCAAACCAAATTAGAGCCCAGTGTTTTCTTTGATGTTTTCCCCGGGGTGAAAGAACCA 6080 || | || || | || || ||||| || ||||| ||| || ||||| ||| Sbjct 1344 ACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCA 1285 Query 6081 GCGGTACTCCACAAG-AAGGACAAGAGGCTTGAAACCAACTTTGAGGAAGCTCTATTTTC 6139 || || || || || || ||| ||||| ||| ||||||| | ||||| ||||| Sbjct 1284 GCAGTGCTG-ACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTC 1226 Query 6140 CAAGTACATAGGAAATGTACAAAGGGACATG--CCTGAGGAATTACTCATTG------CC 6191 || ||| | || || | | |||| || || || || ||| | || Sbjct 1225 AAAATACGTGGGGAAC-----ACGCTTCATGAACCCGACGAGTTTGTCAAGGAGGCGGCC 1171 Query 6192 ATAGATCATTATTCTGAACAACTCAAAATGTTGAATATTGACCCGAGGCCCATTTCA--A 6249 || |||||| | | |||||||| ||| |||| | | | || | | | | Sbjct 1170 TTA---CATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACCA--CCAAGATGAGCA 1116 Query 6250 TGGAGGATGCAATTTACGGTACAGAGGGGCTTGAGGCACTTGATCTTGGAACTAGTGCGA 6309 ||||||||||| |||||| |||||| || || || | |||||| || ||||| Sbjct 1115 TGGAGGATGCATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCACACAAGTGCAG 1056 Query 6310 GCTACCCGTACGTTGCAATGGGCATCAAGAAAAGAGATATTTTGAATAAAGAGACCAGGG 6369 | || || ||| |||| | ||||||||||||| || |||||| || | || | | Sbjct 1055 GATATCCATACAGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAACTCGCG 996 Query 6370 ATGTCACTAAGATGCAAGAGTGCATAGATAAGTATGGTTTAAATCTACCCATGGTC-ACC 6428 |||||| |||||| || | ||| || |||||||| || ||||| || | || || Sbjct 995 ATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTA-CCGTACTCTACT 937 Query 6429 TATGTCAAGGATGAACTCAGGGCGCCAGATAAGATCAGGAAAGGAAAAAGCCGTTTGATA 6488 ||||| || |||||||| ||||| || ||||||| |||||| || ||| | ||| Sbjct 936 TATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATA 877 Query 6489 GAGGCATCTAGCTTGAATGATTCAGTAGCCATGCG-GTGCTACTTTGGGAACCTCTACAA 6547 || || ||| | ||||| ||||| | || | || | |||||| |||| || | Sbjct 876 GAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACA-TTTGGGCACCTTTATGA 818 Query 6548 GGTTTTCCACACCAACCCTGGAACCATCTCCGGCTGTGCCGTTGGATGCGACCCTGAAAC 6607 | ||||||| |||| || || || ||| |||| | || ||||| ||| |||| || Sbjct 817 AGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGT 758 Query 6608 CTTCTGGAGCAAGATCCCAGTGATGATGGATGGTGAGCTTTTTGGCTTTGATTATACTGC 6667 |||||||||||| | ||| | | | || |||||| | ||||| || | | Sbjct 757 GTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGG 698 Query 6668 ATATGATGCTAGCCTGTCTCCCATGTGGTTCCATGCCCTGGCAGA-AGTCCTTAGACGGA 6726 ||||| ||||| || || |||||||| || |||| ||| |||||| | | Sbjct 697 GTATGACGCTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGG-AGATAGTCCTGCGGGAAA 639 Query 6727 TTGGATTTGTTGAGTGCAAGCACTTTAT-TGATCAACTTTGCTGCAGCCACCACCTTTAT 6785 ||||| | | | | ||| | | | | || | | || ||| || | || Sbjct 638 TTGGA--TACTCCGAAGACGCAGTGTCTCTCAT--AGAAGGGATCAATCACACCCATCAT 583 Query 6786 ATG------GATAAGCACTATTATGTGGTTGGGGGCATGCCTTCTGGCTGCTCTGGCACC 6839 || |||| |||| ||| ||||||| ||||| || || ||||| |||||| Sbjct 582 GTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACC 523 Query 6840 TCCATCTTCAATTCTATGATTAACAACCTAATCATCCGCACTCTTGTGCTCACAGTTTAT 6899 ||||| ||||| || ||||| ||||| | || || | || || || | | | | Sbjct 522 TCCATTTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATTC 463 Query 6900 AAAAATATTGATTTGGATGATCTTAAGATAATAGCCTACGGGGATGACGTGCTCGCGTCG 6959 ||| || ||| | ||||| || || || | |||||||||||||| ||| | || Sbjct 462 AAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGT 403 Query 6960 TACCCGTATGAGATTGA-TGCCAGCCTCTTGGCAGAAGCTGGTAAAAGCTTTGGTCTAAT 7018 ||||| | ||||| || | | |||||| | | || || | |||||||| Sbjct 402 TACCCCTTCCCAATTGACTGTCTG-GAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAAC 344 Query 7019 CATGACTCCACCAGATAAATCTGCGGAGTTTGTCAAATTAACCTGGGATAACGTGACCTT 7078 ||||| || | || || || | ||| | | || ||||| || | || || Sbjct 343 TATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACTTT 284 Query 7079 TTTGAAGAGGAAGTTCGTGCGTGATGCACGGTACCCTTTCCTTGTACATCCGGTCATGGA 7138 |||||||| ||| ||| |||| | | ||| || || | || || ||| Sbjct 283 CTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCC 224 Query 7139 CATGTCGAACATCCATGAGTCCATTCGGTGGACGAAAGATCCCAGGCATACTGAAGACCA 7198 ||| | | || || || |||||||| ||||| |||||| | | |||| |||| || Sbjct 223 AATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCA 164 Query 7199 TGTCCGCTCACTTTGCCTATTGGCCTGGCA 7228 || ||||| || ||| |||| || ||||| Sbjct 163 CGTGCGCTCCCTCTGCTTATTAGCATGGCA 134 Score = 116 bits (128), Expect = 2e-22 Identities = 258/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 1017 CCACTTAAGTCACCAAGCGCAGAAGCGTGCGGTTACAGTGATCGCGTAGCCCAGTTGACA 1076 ||| | || || ||| || || || || |||||||||||||| || || || || || Sbjct 6434 CCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACT 6375 Query 1077 CTTGGCAACAGCACTATCACTACCCAAGAGGCAGCAAATATATGCGTTGCTTATGGCTGC 1136 ||||||| || |||||||| ||||| |||||||| || |||| ||||| Sbjct 6374 ATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAG 6315 Query 1137 TGGCCTGCAAAGCTTAGCGACACTGATGCCACATCAGTGGACAAGCCCACTGAACCAGGT 1196 |||||| | | | ||| |||||||||| |||||||||| || || |||| | Sbjct 6314 TGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGAT 6255 Query 1197 GTATCAGCGGAGCGCTTTTATACCCTCCGTTCCAAGCCGTGGCAGGCAGATA-GCAAGGG 1255 || || | | | | ||||| || | | || |||| | | || | |||||| Sbjct 6254 GTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGGGA-GAAGTCATCCAAGGG 6196 Query 1256 GTGGTATTGGAAGCTACCCGATGCACTCAACAATACAGGAATGTTTGGACAGAACGCCCA 1315 |||||| ||||| | || |||| | | | || || | ||||| || || || || Sbjct 6195 GTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATGCACA 6136 Query 1316 GTTCCACTACATCTATAGAGGTGGG-TGGGCAGTGCACGTCCAATGCAATGCAACCAAAT 1374 |||||||||| ||||| | ||| | ||| | ||||| || |||||||| | || | Sbjct 6135 GTTCCACTACCTCTATCGGTCAGGGTTCTGCA-TTCACGTGCAGTGCAATGCTAGTAAGT 6077 Query 1375 TCCACCAGGGCACGCTCCTTGT 1396 ||||||| || | ||||| || Sbjct 6076 TCCACCAAGGAGCACTCCTAGT 6055 Score = 105 bits (116), Expect = 3e-19 Identities = 126/163 (77%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 498 AAGAGCCTATTGTGCTAGAGAGGTTTTCCTCCGGAGCCGTGAATGCTGCTAATCCCAACC 557 |||||||||||| ||||| ||| |||||||| || ||||||| |||||||| ||| Sbjct 6955 AAGAGCCTATTGAGCTAG-CTGGTAGTCCTCCGG-CCCCTGAATGCGGCTAATCCTAACT 6898 Query 558 TCCGAGCGTGTGCGCACAATCCAGT-GTTGCTACGTCGTAACGCGCAAGTTGGAGGCGGA 616 | |||| ||| ||| | ||||| | || | ||||||||| |||| | | ||||| Sbjct 6897 GCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGA 6838 Query 617 ACAGACTACTTTCGGTACTCCGTGTTTCCTTATTATT-TTATA 658 || ||||||||| ||| ||||||||||||| ||||| ||||| Sbjct 6837 ACCGACTACTTTGGGT-GTCCGTGTTTCCTT-TTATTCTTATA 6797 >seq906 Length=2416 Score = 178 bits (196), Expect = 6e-41 Identities = 469/703 (67%), Gaps = 20/703 (3%) Strand=Plus/Plus Query 4164 AAGTTTATTGATTGGCTTAAACAAAAGATCCTACCAGAACTCAAAGAGAGAGCAGAGTTC 4223 ||||| ||||| ||||| | | ||||| | |||| | ||| |||| |||||| || Sbjct 882 AAGTTCATTGACTGGCTCAGGGAGAAGATTGTTCCAGCAGCCAAGGAGAAAGCAGAATTT 941 Query 4224 GTCAAGAAGTTAAAACAGCTCCCACTCTTAGAGGCTCAGGTGAACACTCTGGAACACTCT 4283 | | || || || || | ||||| |||||| ||| | | | | || || || Sbjct 942 TTAACCAATTTGAAGCAATTGCCACTGTTAGAGAACCAGATCACGAACTTAGAGCAGTCC 1001 Query 4284 TCCGCTAGTCAGGAGAGG--CAAGAACAATTGTTTGGGAATGT-TCAGTACCTTGCCCAT 4340 | || ||| ||||| | ||| ||||||||||||| ||| ||||| |||||| Sbjct 1002 GCTGCC--TCACAAGAGGACCTTGAAGCTATGTTTGGGAATGTGTCA-TACCTCGCCCAT 1058 Query 4341 CATTGTAGAAAGAACGCCCCGCTTTATGCCGCAGAAGCTAAGCGCGTCTACCATCTAGAG 4400 ||| | ||| | || | || ||| | ||||||||||| ||||| ||||||| Sbjct 1059 TTCTGTCGCAAGTTCCAACCATTATACGCCACGGAAGCTAAGCGAGTCTATGTTCTAGAG 1118 Query 4401 AAGCGCGTCCTCCGTGCCATGCAGTTCAAGACCAAGAACCGCATTGAACCTGTATGTGCA 4460 ||| | | | |||||||||||||| ||| |||| ||||||||||||||| Sbjct 1119 AAGAGAATGAACAACTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTC 1178 Query 4461 CTGATTCATGGCTCACCTGGTACCGGTCAGTCGTTGGCTAC---TATGATAG-TAGGAAG 4516 | ||| |||||||| || || || |||| | || || ||| || | | || Sbjct 1179 ATCATTAGAGGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTC 1238 Query 4517 AAAACTGGCTGAGTACGAAGGTTCCGACGTCTACTCCCTACCGCCTGACCCGGATCATTT 4576 | | | | | |||| | || || ||||| || || || ||||| || ||||| Sbjct 1239 ATAGCAGACA-AGTATCAC---TCTAGTGTGTACTCACTTCCACCAGACCCTGACCATTT 1294 Query 4577 TGATGGCTACCAACAACAAGCCGTCGTAGTGATGGATGATTTACTTCAAAACCCCGATGG 4636 ||| || || |||| |||| ||| ||| ||||||||| | ||||||||| || || Sbjct 1295 TGACGGGTATAAACAGCAAGTGGTCACAGTTATGGATGATCTGTGTCAAAACCCTGACGG 1354 Query 4637 GAAGGACATGACCTTGTTTTGCCAAATGGTTTCGACGGCTCCTTTTACTGTGCCCATGGC 4696 || |||||| | || |||||||| ||||| || || | ||||| || ||||| Sbjct 1355 CAAAGACATGTCATTATTTTGCCAGATGGTGTCCACCGTGGATTTTATCCCACCAATGGC 1414 Query 4697 TGCTTTGGAGGATAAGGGGAAGCT--CTTCACTTCCAAATTTGTGCTAGCTTCTACTAAT 4754 | || | || || ||||| || | |||||| || |||||||| | || || || || Sbjct 1415 TTCTCTCGAAGAAAAGGG--AGTTTCCTTCACATCTAAATTTGTTATCGCATCCACCAAC 1472 Query 4755 GCAGGCCAAGTTACTCCGCCAACCGTGGCTGATTATAAGGCGCTGCAGAGAAGGTTTTTC 4814 || || | ||| ||| || ||| | || | | | || | | | ||||||| | Sbjct 1473 GCTAGCAACATTATAGTGCCTACAGTGTCAGACTCTGACGCCATTCGTCGCAGGTTTTAC 1532 Query 4815 TTTGATTGTGACATTGAGGT-CCAGAAGGAATACAAAAGAGAT 4856 | ||||| ||||||||||| ||| | |||||||| |||| Sbjct 1533 ATGGATTGCGACATTGAGGTGACAG-ACTCATACAAAACAGAT 1574 >seq945 Length=2018 Score = 120 bits (132), Expect = 1e-23 Identities = 259/379 (68%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 1017 CCACTTAAGTCACCAAGCGCAGAAGCGTGCGGTTACAGTGATCGCGTAGCCCAGTTGACA 1076 ||||| ||||| ||| ||| ||||| || ||||||||||||||||| || || | || Sbjct 1623 CCACTGAAGTCTCCATCCGCTGAAGCTTGTGGTTACAGTGATCGCGTGGCACAACTCACC 1564 Query 1077 CTTGGCAACAGCACTATCACTACCCAAGAGGCAGCAAATATATGCGTTGCTTATGGCTGC 1136 |||| ||| ||| || ||||| || ||||| ||||| || || | ||| || Sbjct 1563 ATTGGGAACTCCACCATTACTACACAGGAGGCGGCAAACATCATAGTCGGTTACGGTGAG 1504 Query 1137 TGGCCTGCAAA--GCT-TAGCGACACTGATGCCACATCAGTGGACAAGCCCACTGAACCA 1193 ||||| || | ||| | ||| || |||||| | |||||||| || || ||| Sbjct 1503 TGGCCCTCATACTGCTCTGATGAC---GACGCCACAGCGGTGGACAAACCAACGCGCCCA 1447 Query 1194 GGTGTATCAGCGGAGCGCTTTTATACCCTCCGTTCCAAGCCGTGGCAGGCAGATAGC-AA 1252 | ||| || | | | | |||||||| || | || | |||| | || | | || Sbjct 1446 GATGTTTCGGTGAATAGGTTTTATACACTGGACACTAAACTGTGGGA-AAAGTCATCTAA 1388 Query 1253 GGGGTGGTATTGGAAGCTACCCGATGCACTCAACAATACAGGAATGTTTGGACAGAACGC 1312 ||| |||||||||||| | || |||| | | | || ||| | ||||| |||||||| Sbjct 1387 GGGTTGGTATTGGAAGTTTCCTGATGTGTTGACTGAGACCGGAGTCTTTGGCCAGAACGC 1328 Query 1313 CCAGTTCCACTACATCTATAGAGGTGGG-TGGGCAGTGCACGTCCAATGCAATGCAACCA 1371 ||||| ||||| | |||||| ||| | ||| | || || ||||| || || | || Sbjct 1327 ACAGTTTCACTATTTGTATAGATCAGGGTTTTGCA-TTCATGTGCAATGTAACGCTAGCA 1269 Query 1372 AATTCCACCAGGGCACGCT 1390 | ||||| || || |||| Sbjct 1268 AGTTCCATCAAGGAGCGCT 1250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23608207682864