Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_002058.3 Length=7440 Score E Sequences producing significant alignments: (Bits) Value seq643 484 3e-133 seq1144 343 7e-91 seq906 147 1e-31 seq945 143 1e-30 seq4341 98.7 5e-17 >seq643 Length=7254 Score = 484 bits (536), Expect = 3e-133 Identities = 1025/1498 (68%), Gaps = 31/1498 (2%) Strand=Plus/Minus Query 5840 ACTCTAATGTACAACTTTCCAACCAGAGCAGGACAGTGTGGTGGAGTCATCACATGTACT 5899 ||| | |||||||| || ||||| | |||||||||||||||||| || | || || | Sbjct 1551 ACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTGAC-TGCCGT 1493 Query 5900 GGG-AAAGTCATCGGGATGCATGTTGGTGGGAACGGTTCACACGGGTT-TGCAGCGGCCC 5957 ||| ||||| || ||||| || ||||||| |||||| || || || ||| || |||| Sbjct 1492 GGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGC-GCTGCCC 1434 Query 5958 TGAAGCGATCATACTTCACTCAGAGT-CAAGGTGAAATCCAGTGGATGA-GACCTTCGAA 6015 ||||| | |||||| ||| | |||||||| ||||| ||||||| | || | || Sbjct 1433 TGAAGAGGGGATACTTTTG-CAGTGAACAAGGTGAGATCCAATGGATGAAGCCCAACAAA 1375 Query 6016 GGAAGTGGGATATCCAATCATAAATGCCCCGTCCAAAACCAAGCTTGAACCCAGTGCTTT 6075 | || ||| | | || ||| || | || | || ||||||||||| |||| || Sbjct 1374 GAAACTGGCAGGTTGAA-CATCAACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTT 1316 Query 6076 CCACTATGTGTTTGAAGGGGTGAAGGAACCAGCAGTCCTCACTAAAAACGATCCCAGGCT 6135 ||| ||||||| ||||| || || |||||||| || |||| || || || ||||| Sbjct 1315 TCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCT 1256 Query 6136 TAAGACAGACTTTGAGGAGGCAATTTTCTCCAAGTACGTGGGTAACAAAATTACTGAAGT 6195 | |||||||| |||| |||| || || |||||||| |||| || |||| Sbjct 1255 GGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCTTCATGAACC 1196 Query 6196 GGATGAGTACATGAAAGAGGCAGTAGACCACTATGCTGGCCAGCTCATGTCACTAGACAT 6255 || |||| | || ||||| | || ||||| ||| |||| | |||| || Sbjct 1195 CGACGAGTTTGTCAAGGAGGCGGCCTTACATTATGCCAACCAACTCAAGCAGTTAGATAT 1136 Query 6256 CAACACAGAACAA-ATGTGCTTGGAGGATGCCATGT-ATGGCACTGATGGTCTAGAAGCA 6313 ||| || | ||| ||| || |||||||||| |||| | ||||| || || ||||| Sbjct 1135 CAAGACC-ACCAAGATGAGCATGGAGGATGC-ATGTTACGGCACAGAGAACCTGGAAGCT 1078 Query 6314 CTTGATTTGTCCACCAGTGCTGGCTACCCTTATGTAGCAATGGGAAAGAAGAAGAGAGAC 6373 | ||| | ||| ||||| || || || || ||| | || | ||||| | ||| Sbjct 1077 ATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAAGAAAAAGGAC 1018 Query 6374 ATCTTGAA-CAAACAAACCAGAGACACTAAGGAA-ATGCAAAAACTGC-TCGACACATAT 6430 || ||| | | ||||| | | || | || || ||| ||| || | | |||| ||| Sbjct 1017 ATTTTGGATCCAACAACTC-GCGATG-TCAGCAAGATG-AAATTCTACATGGACAAGTAT 961 Query 6431 GGAATCAACCTCCC--ACTGGTGACTTATGTAAAGGATGAACTTAGATCCAAAACAAAGG 6488 || | | || || ||| |||||||| || ||||||||||| ||| ||| Sbjct 960 GGGTTGGATCTACCGTACTCT--ACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGA 903 Query 6489 TTGAGCAGGGGAAATCCAGATTAATTGAAGCTTCTAGTTTGAATGACTCAGTGGCAATGA 6548 | || | ||||| || | | || ||||| || | |||||||||||| ||| Sbjct 902 TCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGA 843 Query 6549 GAATGGCTTTTGGGAACCTATATGCTGCTTTTCACAAAAACCCAGGAGTGATAACAGGTT 6608 ||||| | |||||| |||| |||| ||||| ||| || ||||| || || |||| Sbjct 842 GAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTT 783 Query 6609 CAGCAGTGGGGTGCGATCCAGATTTGTTTTGGAGCAAAATTCCGGTATTGATGGAAGAGA 6668 |||| || |||||| | |||||| |||| |||||||| | || | | | || Sbjct 782 CAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGAT 723 Query 6669 AGCTGTTTGCTTTTGACTACACAGGGTATGATGCATCTCTCAGCCCTGCTTGGTTCGAGG 6728 ||| || || ||||||||| | |||||||| || ||||||||| | |||||| || Sbjct 722 CGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTTCAGGG 663 Query 6729 CACTAAAGATGGTGCTTGAGAAAATCGGATTC---GGAGACAGAGTTGACTA-CATCGAC 6784 | || |||| || || | |||| |||| | | |||| ||| | || ||| || Sbjct 662 CGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGAAGACGCAGT-GTCTCTCATAGAA 604 Query 6785 TACCTAAACCACTCACACCACCTGTACAAGAATAAAACATACTGTGTCAAGGGCGGTATG 6844 | || ||| | || || ||||| |||||||| || ||||| || || ||| Sbjct 603 GGGATCAATCACACCCATCATGTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATG 544 Query 6845 CCATCTGGCTGCTCAGGCACTTCAATTTTTAACTCAATGATTAACAACTTGATTATCAGG 6904 || || || ||||||||||| || ||||| ||||| ||||| ||||| | ||||| || Sbjct 543 CCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATCATTATTAGA 484 Query 6905 ACACTCTTACTGAAAACCTACAAGGGCATAGATTTAGACCACCTAAAAATGATTGCCTAT 6964 |||||| | | ||||| | ||| || |||||| |||| | || || ||| | ||||| Sbjct 483 ACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTAC 424 Query 6965 GGTGATGATGTAATTGCTTCCTACCCCCATGAAGTTGAC--GCTAGTCTCCTAGCCCAAT 7022 || |||||||| | ||| |||||| | ||||| || | | | || | Sbjct 423 GGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTGGAGT--TGGCAAGAA 366 Query 7023 CAGGAAAAGACTATGGACTAACTATGACTCCAGCTGACAAATCAGCTACATTTGAAACAG 7082 |||| || || ||||| ||||||||||| || || ||||| ||| | ||| | | Sbjct 365 CAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGG 306 Query 7083 TCACATGGGAGAATGTAACATTCTTGAAGAGATTCTTCAGGGCAGACGAGAAATACCCAT 7142 | ||||||||||||| || |||||||||||| ||| | | || | ||| ||| | Sbjct 305 TTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGT 246 Query 7143 TTCTTATTCATCCAGTAATGCCAATGAAGGAAATTCATGAATCAATTAGATGGACTAAAG 7202 |||| || || || |||||||||| ||| ||||| ||||| ||| | ||||| |||| Sbjct 245 TTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAG 186 Query 7203 ATCCTAGGAACACTCAGGATCACGTTCGCTCTCTGTGCCTTTTAGCTTGGCACAATGGCG 7262 || | | | ||||| |||||||| ||||| || ||| | ||||| |||||||| || Sbjct 185 ATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGA 126 Query 7263 AAGAAGAATATAACAAATTCCTAGCTAAAATCAGGAGTGTGCCAATTGGAAGAGCTTT 7320 |||| || ||| | ||||| | | |||||| || |||||||||| ||| || Sbjct 125 AAGAGGAGTATGAAAAATTTGTGAGTGCAATCAGATCAGTTCCAATTGGAAAAGCATT 68 Score = 390 bits (432), Expect = 5e-105 Identities = 409/524 (78%), Gaps = 19/524 (4%) Strand=Plus/Minus Query 126 TCAATAGAAGGGGGTACAAACCAGTACCACCACGAACAAGCACTTCTGTTTCCCCGG--T 183 ||||||| ||| | || |||||| ||| || ||||||||||||||||||||| | Sbjct 7247 TCAATAGCAGGTGTGGCACACCAGTCATACCTTGATCAAGCACTTCTGTTTCCCCGGACT 7188 Query 184 GA-TGTCGTATAGACTGCTTGCGTGGTTGAAAGCGA---CGGATCCGTTATCCGCTTATG 239 || | || |||| ||||| ||| || |||| | || || | ||||| ||| | Sbjct 7187 GAGTATCA-ATAGGCTGCTCGCGCGGCTGAAGGAGAAAACG--TTCGTTACCCGACCAAC 7131 Query 240 TACTTCGAGAAGCCCAGTACCACCTCGGAATCTTCGATGCGTTGCGCTCAGCACTCAACC 299 ||||||||||||| ||||||||| | | | | ||| |||||||||| |||| Sbjct 7130 TACTTCGAGAAGCTTAGTACCACCATGAACGAGGCAGGGTGTTTCGCTCAGCAC--AACC 7073 Query 300 CCAGAGTGTAGCTTAGGCTGATGAGTCTGGACATCCCTCACCGGTGACGGTGGTCCAGGC 359 |||| ||||| | ||||||||||||| || ||| || || ||| ||| ||| Sbjct 7072 CCAG--TGTAGATCAGGCTGATGAGTCACTGCAACCCCCATGGGCGACCATGGCAGTGGC 7015 Query 360 TGCGTTGGCGGCCTACCTATGGCTAACGCCATGGGACGCT--AGTTGTGAACAAGGTGTG 417 |||||||||||||| || |||| || |||||||||||| | || ||| || |||||| Sbjct 7014 TGCGTTGGCGGCCTGCCCATGGAGAAATCCATGGGACGCTCTAATTCTGA-CATGGTGTG 6956 Query 418 AAGAGCCTATTGAGCTACATAAGAATCCTCCGGCCCCTGAATGCGGCTAATCCCAACCTC 477 ||||||||||||||||| | | |||||||||||||||||||||||||||| ||| | Sbjct 6955 AAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGC 6896 Query 478 GGAGCAGGTGGTCACAAACCAGTGATTGGCCTGTCGTAACGCGCAAGTCCGTGGCGGAAC 537 |||||| || |||| |||||||| ||| |||||||||| |||| || | ||||||| Sbjct 6895 GGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGAAC 6836 Query 538 CGACTACTTTGGGTGTCCGTGTTTCCTTTTATT-TTATTGTGGCTGCTTATGGTGACAAT 596 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 6835 CGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAAT 6776 Query 597 CACAGA-TTGTTATCATAAAGCGAATTGGATTGGCCATCCGGTG 639 || ||| |||||| |||| ||| |||||||||||||||||||| Sbjct 6775 CAAAGAGTTGTTACCATATAGC-TATTGGATTGGCCATCCGGTG 6733 Score = 196 bits (216), Expect = 2e-46 Identities = 461/684 (67%), Gaps = 18/684 (3%) Strand=Plus/Minus Query 4118 AAGCAAGGTGACAGTTGGTTGAAGAAGTTTACTGAAGCATGCAACGCAGCTAAGGGACTG 4177 ||||| ||| | |||||| |||||||| | || || | || || ||||| || Sbjct 3270 AAGCAGAGTGCCTCTTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTT 3211 Query 4178 GAGTGGGTGTCAAACAAAATCTCAAAATTCATTGATTGGCTCAAGGAGAAAATTATCCCA 4237 |||||| | || ||||||||| ||||| || |||||||||||||||||||| || || Sbjct 3210 GAGTGGATCTCCAACAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCG 3151 Query 4238 CAAGCTAGAGATAAGTTGGAATTTGTAACAAAACTTAGACAACTAGAAATGCTGGAAAAC 4297 |||| ||| || | || ||| ||| || || | ||||| | |||| ||| Sbjct 3150 GCTGCTAAAGAGAAAGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAAC 3091 Query 4298 CAAATCTCAACTATACACCAATCATGCCCTAGTCAGGAACACC---AGGAAATTCTATTC 4354 ||||| || | | | | || ||| || ||||| ||| ||| || | | Sbjct 3090 CAAATTTCTAATCTCGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGC 3031 Query 4355 AATAATGTCAGA--TGGTTATCCA-TCCAGTCTAAGAGGTTTGCCCCTCTTTACGCAGTG 4411 || |||| | ||| ||| | | | | | | ||||||| | | || | Sbjct 3030 AACG-TGTCTTACCTGGC---CCACTTCTGCCGCAAATTCCAACCCCTCTATGC-CAC-G 2977 Query 4412 GAAGCCAAAAGAATACAGAAACTAGAGCATACTATTAACAACTACATACAGTTCAAGAGC 4471 ||||| || || | | ||||| | | || || || ||||| |||||||||||| Sbjct 2976 GAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGC 2917 Query 4472 AAACACCGTATTGAACCAGTATGTTTGCTAGTACATGGCAGCCCCGGAACAGGTAAATCT 4531 ||||||||||||||||| ||||| | | | ||| || || || || || || Sbjct 2916 AAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCA 2857 Query 4532 GTAGCAACCAACCTGATTGCTAGAGCCATAGCTGAAAGAGAAAACACGTCCAC---GTAC 4588 | ||||| | ||||||||||||||||| || | || | ||| |||| ||| Sbjct 2856 TTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACA-AGTAC-CAC-TCCAGTGTGTAT 2800 Query 4589 TCGCTACCCCCGGATCCATCACACTTCGACGGATACAAACAACAGGGAGTGGTGATTATG 4648 || |||| || || ||| ||||| |||||||||||||||||| || ||||| Sbjct 2799 TCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATG 2740 Query 4649 GACGACCTGAATCAAAACCCAGATGGTGCGGACATGAAGCTGTTCTGTCAGATGGTATCA 4708 |||||||| ||||||||||| || |||||| || || ||||||||||| || Sbjct 2739 GACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCC 2680 Query 4709 ACAGTGGAGTTTATACCACCCATGGCATCCCTGGAGGAGAAAGGAATCCTGTTTACTTCA 4768 |||||||| |||||||| || |||||||| ||||||||||| ||| || || || || Sbjct 2679 ACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCC 2620 Query 4769 AATTACGTTCTAGCATCCACAAAC 4792 || | || | || ||||| ||| Sbjct 2619 AAGTTTGTGATTGCCTCCACTAAC 2596 >seq1144 Length=1302 Score = 343 bits (380), Expect = 7e-91 Identities = 819/1220 (67%), Gaps = 35/1220 (3%) Strand=Plus/Plus Query 6081 ATGTGTTTGAAGGGGTGAAGGAACCAGCAGTCCTCACTAAAAACGATCCCAGGCTTAAGA 6140 ||||||||||||| |||||||||||||| | || | || || || || | || Sbjct 4 ATGTGTTTGAAGGTAATAAGGAACCAGCAGTTTTAACAAGTAAAGACCCTAGATTGGAGG 63 Query 6141 CAGACTTTGAGGAGGCAATTTTCTCCAAGTACGTGGGTAACAAAATTACTGAAGTG-GAT 6199 |||||||| | || | || |||||||| ||||| || |||| || ||| Sbjct 64 TCGACTTTGAACAAGCCCTGTTTTCCAAGTATGTGGGCAATGTT-TTACACGAGCCCGAT 122 Query 6200 GAGTACATGAAAGAGGCAGTAGACCACTATGCTGGCCAGCTCATGTCACTAGACATCAAC 6259 || || ||| | || | |||||| || || || | | | ||||| ||| Sbjct 123 GAATATGTGACTCAAGCTGCCCTCCACTACGCGAATCAACTTAAACAATTGGACATAAAC 182 Query 6260 ACAGAACAA-ATGTGCTTGGAGGATGCCATGTATGGCACTGATGGTCTAGAAGCACTTGA 6318 || | ||| ||| || ||||||| || ||||||||||| || || ||| |||| Sbjct 183 ACT-AGCAAGATGAGCATGGAGGAAGCGTGCTATGGCACTGAAAACCTGGAGGCAATTGA 241 Query 6319 TTTGTCCACCAGTGCTGGCTACCCTTATGTAGCAATGGGAAAGAAGAAGAGAGACAT-CT 6377 | | ||| ||||| || ||||| || || | || | ||||| |||||||| || Sbjct 242 CCTCTGCACTAGTGCCGGGTACCCATACAGCGCCCTTGGCATCAAGAAAAGAGACATTCT 301 Query 6378 TGAACAAACAAACCAGAGACA---CTAAG--GAAATGCAAAAACTGCTCGACACATATGG 6432 ||| | |||| |||| || ||||| ||||| | | | | || | ||| || Sbjct 302 TGACCCCACAA-CCAGGGATGTGTCTAAGATGAAATTCTATA-----TGGATAAATACGG 355 Query 6433 AATCAACCTCCCACTGGTGACTTATGTAAAGGATGAACTTAGATCCAAAACAAAGGTTGA 6492 | | || ||| || ||||| |||||||| ||||| ||| || | | Sbjct 356 GCTAGATCTGCCATACTCTACCTATGTGAAGGATGAGCTTAGGTCCCTGGATAAAATCAA 415 Query 6493 GCAGGGGAAATCCAGATTAATTGAAGCTTCTAGTTTGAATGACTCAGTGGCAATGAGAAT 6552 | | || || || | || || || ||| ||| ||||||||||| || | ||||| Sbjct 416 GAAAGGAAAGTCACGCTTGATAGAGGCTAGTAGCTTGAATGACTCTGTCTACCTCAGAAT 475 Query 6553 GGCTTTTGGGAACCTATATGCTGCTTTTCACAAAAACCCAGG-AGTGATAACAGGTTCAG 6611 |||||||||| |||| |||| || ||||| ||||| || | || | || || |||| Sbjct 476 GGCTTTTGGGCACCTTTATGAGGCGTTTCATGCTAACCCTGGCACTG-TGACTGGCTCAG 534 Query 6612 CAGTGGGGTGCGATCCAGATTTGTTTTGGAGCAAAATTCCGGTATTGATGGAAGAGAAGC 6671 ||||||| || | || || |||||||||||||| | ||| | || || | | || Sbjct 535 CAGTGGGTTGTAACCCGGACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGGTCGC 594 Query 6672 TGTTTGCTTTTGACTACACAGGGTATGATGCATCTCTCAGCCCTGCTTGGTTCGAGGCAC 6731 | ||||| ||||||||| |||| |||||||| ||||||||| | |||||| ||| Sbjct 595 TCTTTGCCTTTGACTACTCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGGGCTT 654 Query 6732 TAAAGATGGTGCTTGAGAAAATCGG--ATTC---GGAGACAGAGTTGACTACATCGACTA 6786 || | | ||| | | | || || |||| |||| | | || ||| || || Sbjct 655 TAGAAGTTGTGTTACGGGAGATTGGGTATTCAGAGGAGGCCGTGTCC-CTA-ATAGAAGG 712 Query 6787 CCTAAACCACTCACACCACCTGTACAAGAATAAAACATACTGTGTCAAGGGCGGTATGCC 6846 | |||||| | ||||| |||| ||| |||||||||||||| || || ||||| Sbjct 713 GATCAACCACACCCACCATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCC 772 Query 6847 ATCTGGCTGCTCAGGCACTTCAATTTTTAACTCAATGATTAACAACTTGATTATCAGGAC 6906 || || || || || ||||| || ||||| |||||||| |||||| | || ||||| || Sbjct 773 CTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAAC 832 Query 6907 ACTCTTACTGAAAACCTACAAGGGCATAGATTTAGACCACCTAAAAATGATTGCCTATGG 6966 || || | ||||| | ||||| ||||| | || | | || ||| | |||||||| Sbjct 833 CCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTATGG 892 Query 6967 TGATGATGTAATTGCTTCCTACCCC-----CATGAAGTTGACGCTAGTCTCCTAGCCCAA 7021 || ||||| | ||| |||||| ||| | ||| | ||| ||| | Sbjct 893 GGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGA-TTGCCTTGAGTTGGCTA----AG 947 Query 7022 TCAGGAAAAGACTATGGACTAACTATGACTCCAGCTGACAAATCAGCTACATTTGAAACA 7081 | || ||||| ||||| | || |||||||| || ||||||||| | || | | Sbjct 948 ACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAA 1007 Query 7082 GTCACATGGGAGAATGTAACATTCTTGAAGAGATTCTTCAGGGCAGACGAGAAATACCCA 7141 || |||||||| |||| || ||| |||||||| ||| | ||||| | ||| ||| Sbjct 1008 GTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTCCA 1067 Query 7142 TTTCTTATTCATCCAGTAATGCCAATGAAGGAAATTCATGAATCAATTAGATGGACTAAA 7201 || | ||||| || ||||| |||| || || |||||||| ||| ||||||||||| Sbjct 1068 TTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAA 1127 Query 7202 GATCCTAGGAACACTCAGGATCACGTTCGCTCTCTGTGCCTTTTAGCTTGGCACAATGGC 7261 || | | ||||| || |||||||| ||||| ||||| || || || ||||||||||| Sbjct 1128 GACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGT 1187 Query 7262 GAAGAAGAATATAACAAATT 7281 | || |||||| | || || Sbjct 1188 AAGGATGAATATGAGAAGTT 1207 >seq906 Length=2416 Score = 147 bits (162), Expect = 1e-31 Identities = 262/374 (70%), Gaps = 14/374 (4%) Strand=Plus/Plus Query 4433 CTAGAGCATACTATTAACAACTACATACAGTTCAAGAGCAAACACCGTATTGAACCAGTA 4492 |||||| | | || ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1113 CTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTA 1172 Query 4493 TGTTTGCT-AGTACATGGCAGCCCCGGAACAGGTAAATCTGTAGCAACCAACCTGATTGC 4551 ||| | | | || | ||| || || || || || || | || ||| | ||||| Sbjct 1173 TGTCTCATCATTAGA-GGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGC 1231 Query 4552 TAGAGCCATAGCTGAAAGAGAAAACACGTCCA---CGTACTCGCTACCCCCGGATCCATC 4608 | | | |||||| || | || | ||| || | |||||| || || || || || Sbjct 1232 TCGGGTCATAGCAGACA-AG-TATCAC-TCTAGTGTGTACTCACTTCCACCAGACCCTGA 1288 Query 4609 ACACTTCGACGGATACAAACAACAGGGAGTGGTGA---TTATGGACGACCTGAATCAAAA 4665 || || ||||| || ||||| || |||||| | ||||||| || ||| |||||| Sbjct 1289 CCATTTTGACGGGTATAAACAGCA---AGTGGTCACAGTTATGGATGATCTGTGTCAAAA 1345 Query 4666 CCCAGATGGTGCGGACATGAAGCTGTTCTGTCAGATGGTATCAACAGTGGAGTTTATACC 4725 ||| || || |||||| | || || |||||||| || || ||||| ||||| || Sbjct 1346 CCCTGACGGCAAAGACATGTCATTATTTTGCCAGATGGTGTCCACCGTGGATTTTATCCC 1405 Query 4726 ACCCATGGCATCCCTGGAGGAGAAAGGAATCCTGTTTACTTCAAATTACGTTCTAGCATC 4785 ||| ||||| || || || || || ||| | || || || || | ||| | ||||| Sbjct 1406 ACCAATGGCTTCTCTCGAAGAAAAGGGAGTTTCCTTCACATCTAAATTTGTTATCGCATC 1465 Query 4786 CACAAACTCAAGCA 4799 ||| ||| | |||| Sbjct 1466 CACCAACGCTAGCA 1479 >seq945 Length=2018 Score = 143 bits (158), Expect = 1e-30 Identities = 534/810 (66%), Gaps = 49/810 (6%) Strand=Plus/Minus Query 544 CTTTGGGTGTCCGTGTTTCCTTTTATT-TTATTGTGGCTGCTTATGGTGACAATCACAG- 601 || |||||||||||||||||||||||| |||| |||||||||||||||||||| |||| Sbjct 2018 CTCTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATTACAGA 1959 Query 602 ATTGTTATCATAAAGCGAATTGGATTGGCCATCCG--GTGAAAGTGAGACTCATTATCTA 659 ||||||| |||| ||| ||||||||||||||||| ||| || ||| || ||||| || Sbjct 1958 ATTGTTACCATATAGC-TATTGGATTGGCCATCCGGTGTGCAATAGAG-CT-ATTATATA 1902 Query 660 TCTGTTTGCTGGATCCGCTCCATTGAGTGTGTTTACTCTAAGTACAATTTCAACAGTTAT 719 || |||| ||| | | ||| | | | | |||| || || || || Sbjct 1901 CCTATTTGTTGGCTTTGTGCCACTAA--CCTTAAAATCTATAACCACCCTCGAC--TTTA 1846 Query 720 TTCAATCAGACAATTGTATCATA-ATGGGTGCTCAGGTTTCATCACAGAAAGTGGGCGCA 778 | | | | |||| ||| | ||||| | ||||| || | ||| | ||| | Sbjct 1845 TACTAACCCTCAATACAGTCAAACATGGGCTCACAGGTGTCCACTCAGCGATCCGGCTCC 1786 Query 779 CATGAAAACTCAAATAGAGCGTATGGTGGTTCTACCATTAATTACACCACCATTAATTAT 838 || || ||||| ||| ||| | || || |||||||||||||| ||||| || ||| Sbjct 1785 CACGAGAACTCCAATTCAGCTACAGAAGGCTCCACCATTAATTACACTACCATCAACTAT 1726 Query 839 TATAGAGATTC---AGCTAGTAACGCGGCTTCGAAACAGGACTTCTCTCAAGACCCTTCC 895 || | ||| || ||| | |||| | |||||| | || ||||||||| Sbjct 1725 TACAAAGACTCCTATGCTGCGACAGCGGGT---AAACAGAGCCTCAAACAAGACCCTGAT 1669 Query 896 AAGTTCACCGAGCCCATCAAGGA---TGTC-CTGATAAAAACAGCCCCAATGCTAAACTC 951 ||||| | | || |||| || | || |||| || | || ||| || || || Sbjct 1668 AAGTTTGCTAACCCTGTCAAAGACATTTTCACTGA-AATGGCTGCGCCA---CTGAAGTC 1613 Query 952 GCCAAACATAGAGGCTTGCGGGTATAGCGATAGAGTACTGCAATTAACACTGGGAAACTC 1011 ||| | || ||||| || || || ||| | || ||| | || | || ||||| Sbjct 1612 TCCATCCGCTGAAGCTTGTGGTTACAGTGATCGCGTGGCACAACTCACCATTGGGAACTC 1553 Query 1012 CACTATAACCACACAGGAGGCGGCTAA-TTCAGTAGTCGCTTATGGGCGTTGGCCTGAAT 1070 ||| || || |||||||||||||| || ||| |||||| ||| || ||||| || Sbjct 1552 CACCATTACTACACAGGAGGCGGCAAACATCA-TAGTCGGTTACGGTGAGTGGCCCTCAT 1494 Query 1071 A----TCTGAGGGACAGCGAAGCCAATCCAGTGGACCAGCCGACAGAACCAGACG--TCG 1124 | ||||| | ||| |||| | |||||| | || || ||||| | ||| Sbjct 1493 ACTGCTCTGATG----ACGACGCCACAGCGGTGGACAAACCAACGCGCCCAGATGTTTCG 1438 Query 1125 CTGCATGCAGGTTTTATACGCTAGACACCGTGTCTTGGACGAAAGAGTC-GCGA--GGGT 1181 || || ||||||||||| || ||||| | || |||| |||| | | || | Sbjct 1437 GTGAAT--AGGTTTTATACACTGGACAC--TAAACTGTGGGAAA-AGTCATCTAAGGGTT 1383 Query 1182 GGTGGTGGAAGTTGCCTGATGCACTGAGGGACATGGGACTCTTTGGGCAAAATATGTACT 1241 ||| |||||||| ||||||| ||| || | ||| ||||||| || || | | Sbjct 1382 GGTATTGGAAGTTTCCTGATGTGTTGACTGAGACCGGAGTCTTTGGCCAGAACGCACAGT 1323 Query 1242 ACCACTACCTAGGTAGGTCCGGGTACACCGTGCATGTACAGTGTAACGCCTCCAAATTCC 1301 ||||| | ||| || |||| | | ||||| || |||||||| ||| |||| Sbjct 1322 TTCACTATTTGTATAGATCAGGGTTTTGCATTCATGTGCAATGTAACGCTAGCAAGTTCC 1263 Query 1302 ACCAGGGGGCACTAGGGGTATTCGCCGTAC 1331 | || || || || | || ||||| ||| Sbjct 1262 ATCAAGGAGCGCT---GTTAGTCGCCATAC 1236 >seq4341 Length=257 Score = 98.7 bits (108), Expect = 5e-17 Identities = 157/215 (73%), Gaps = 13/215 (6%) Strand=Plus/Minus Query 159 GAACAAGCACTTCTGTTTCCCCGGT--GA-TGTCGTATAGACTGCTTGCGTGGTTGAAAG 215 || ||||||||||||||||||||| || | || |||||||||| || ||||||| | Sbjct 208 GATCAAGCACTTCTGTTTCCCCGGACCGAGTATCA-ATAGACTGCTCACGCGGTTGAAGG 150 Query 216 CGACGGA-TCCGTTATCCGCTTATGTACTTCGAGAAGCCCAGTACCACCTCGGAATCTTC 274 || | ||||||||||| || ||||||||||| | |||| |||| ||| || | Sbjct 149 AGAAAGCGTCCGTTATCCGGCTAACTACTTCGAGAAACTTAGTAACACCATTGAAGCTGC 90 Query 275 GATGCGTTGCGCTCAGCACTCAACCCCAGAGTGTAGCTTAGGCTGATGAGT--CTGGACA 332 | ||| ||||| ||||| |||| |||||| | ||| ||||||| ||| | | Sbjct 89 AGAGTGTTTCGCTCGGCACT--TCCCC--CGTGTAGATCAGGTCGATGAGTCACTGCA-A 35 Query 333 TCCCTCACCGGTGACGGTGGTCCAGGCTGCGTTGG 367 |||| ||| |||||| |||| ||||||| ||| Sbjct 34 TCCC-CACGGGTGACCGTGGCAGTGGCTGCGCTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23691402776352