Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_003987.1 Length=7491 Score E Sequences producing significant alignments: (Bits) Value seq1144 93.3 2e-15 >seq1144 Length=1302 Score = 93.3 bits (102), Expect = 2e-15 Identities = 197/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 7060 TGGCAAAGAGTTATGGTTTAACCATAACACCAGCAGATAAATCAACAACATTCCAAACAG 7119 ||||||||||| ||||||| ||||| || || ||||| |||||| | ||| | || Sbjct 950 TGGCAAAGAGT-ATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAAG 1008 Query 7120 GAACTAAACTTACAGATGTAACATTCCTGAAAAGGGGTTTCAAATTTGATGAAGAGTACC 7179 ||| | | ||| || |||||||| || || ||| || | | | | Sbjct 1009 TAAC---ATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTC 1065 Query 7180 CCTTCTTGTGTCATCCTGTATTTCCTATGGAGGAAGTACATGAATCAATTAGATGGACCA 7239 | ||||| ||| ||| | || ||| || | |||||||| ||| ||||||| | Sbjct 1066 CATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTA 1125 Query 7240 AGAATGCCAGCTACACTCAAGAACATGTCACCTCGCTGTGTCTATTGGCATGGCACAATG 7299 | | || || |||| ||||| || || ||| |||||||| |||||||||||||||| Sbjct 1126 AAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATG 1185 Query 7300 GTGAGGAGGTTTATGAAGAGTTCTGCACAAAAATCAGATCAGTACCAGTAGG 7351 || |||| | ||||| |||| | ||| |||||||| ||||| || Sbjct 1186 GTAAGGATGAATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTTGG 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23854593152040