Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_003988.1 Length=7374 Score E Sequences producing significant alignments: (Bits) Value seq643 136 2e-28 seq906 123 1e-24 seq1144 113 2e-21 seq945 100 1e-17 >seq643 Length=7254 Score = 136 bits (150), Expect = 2e-28 Identities = 160/210 (76%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 382 TGGGACGCCTTGATAATGACAAGGTGGGAAGAGCCTATTGGGCTAGCTGGTT-TCCTCCG 440 |||||||| | || ||||| |||| ||||||||||||| |||||||||| ||||||| Sbjct 6983 TGGGACGCTCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCG 6924 Query 441 GCCTCCTGAATGCGGCTAACCTTAACCCCAGAGCATATGGTAGCAACCCAGCTACTAGTA 500 ||| ||||||||||||||| | |||| | ||||| ||| | | | |||| | || Sbjct 6923 GCC-CCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTG 6865 Query 501 TGTCATAATGCGTAAGTCTGGGATGGGACCGACTACTTTGGAGAGTCCGTGTTTCTATTG 560 |||| ||| | | || |||| || |||||||||||||| | ||||||||||| || Sbjct 6864 TGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGG-GTGTCCGTGTTTCCTTTT 6806 Query 561 TTTCTT-TAATCAAT-CTTATGGTGACAAT 588 ||||| || | | |||||||||||||| Sbjct 6805 ATTCTTATATTGGCTGCTTATGGTGACAAT 6776 Score = 127 bits (140), Expect = 1e-25 Identities = 253/366 (69%), Gaps = 18/366 (5%) Strand=Plus/Minus Query 4278 CCACTGTATGCCAGTGAAGCTAGGCGTGTCTTCCAGATGGAAAAGAAGATGAATAACTAC 4337 || || ||||||| ||||| | | | || | | | ||||||| |||||||| ||| Sbjct 2991 CCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTAC 2932 Query 4338 ATACAGTTCAAGAGCAAATCAAGGATTGAACCCGTATGTTTATTAATCCATGGGAGTCCT 4397 || ||||||||||||||| | |||||||| ||||| || | ||| || ||| Sbjct 2931 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCT 2872 Query 4398 GGTGCTGGAAAGTCTGTGGCAACTTCAATAATTGGCCGTGCAATAGCCGA-GAGT---AT 4453 ||| |||| ||||| ||||||| || |||| | || ||||| || ||| | Sbjct 2871 GGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCAC 2812 Query 4454 TTCAGGGTCAGTATATTCATTACCACCGGACCC-GACTTTCTTTGATGGGTATAAACAGC 4512 | ||| || ||||| ||||| || ||||| ||| |||||| || || ||||| | Sbjct 2811 TCCAG----TGTGTATTCCTTACCTCCAGACCCAGAC-CACTTTGACGGATACAAACAAC 2757 Query 4513 AGGAAGTGGTCA---TAATGGATGACCTGCTACAGAACCCAGATGGTAAAGATGTTGGCA 4569 || | |||| | ||||| ||||| || |||||||| || ||||| || || Sbjct 2756 AG---ATCGTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGA-CATGTCA 2701 Query 4570 -TGCTGTGTCAAATGGTGTCCACAGTAGATTTCCACCCACCTATGGCAGCATTGGAGGAA 4628 | | ||||| ||||| |||||||| ||||| || ||||||||| | ||||||| Sbjct 2700 CTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAG 2641 Query 4629 AAAGGA 4634 || ||| Sbjct 2640 AAGGGA 2635 Score = 113 bits (124), Expect = 2e-21 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 869 TGCTGAGGCATGTGGGTACAGCGACCGAGTTGCACAACTGACAATTGGCAATTCCACTAT 928 ||||||||||||||| ||||| || || || |||||| | || ||||||||||| || || Sbjct 6417 TGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCAT 6358 Query 929 CACTACTCAGGAAGCCGCCAATGTGGTGGTCGCATATGGACAATGGCCT---GAATATTT 985 |||||| || ||||| || || | | || | ||||| | |||||| | | || Sbjct 6357 CACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTC 6298 Query 986 AGATTCGAAGGATGCAACTGCCGTGGATAAGCCCACACAGCCCGATGTAGCCTCAAATAG 1045 || || ||||| ||||| ||||| || || || | || ||||| | ||||| Sbjct 6297 GGACTC---TGATGCCACTGCAGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAG 6241 Query 1046 ATTTTACACTCTTAAGACAGTGTCTTGGGAGAAGAGTTCAACTGGCTGGTATTGGAAATT 1105 |||||||| | | ||| | ||||||||| || | || ||||| |||||||| Sbjct 6240 GTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATT 6181 Query 1106 CTCGGAT 1112 | ||||| Sbjct 6180 CCCGGAT 6174 Score = 105 bits (116), Expect = 3e-19 Identities = 647/1023 (63%), Gaps = 26/1023 (3%) Strand=Plus/Minus Query 6183 CTTGAAGCTTTAGATCTGAGCACTAGTGCTGGATATCCATACGTAACCCAAGGCATCAAG 6242 || |||||| ||||||| ||| ||||| |||||||||||| | | |||||||||| Sbjct 1086 CTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAAG 1027 Query 6243 AAGCGGGACCTCTTTAAGCCAAATA---GAGACCTTAGCAAGTTTAAAGAGTGTATGGAT 6299 || |||| | || | |||| | | || | |||||| | ||| | ||||| Sbjct 1026 AAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAGATGAAATTCTACATGGAC 967 Query 6300 AAGTATGGATTGAATCTCCCAATGGTC-ACTTTCTTGAAGGATGAG-TTAAGGCCGCTGT 6357 |||||||| ||| |||| || | || |||| | || ||||| ||| |||| | Sbjct 966 AAGTATGGGTTGGATCTACCG-TACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGA 908 Query 6358 CAAAAGTA-GAAGCCGGAAAAACACGATTAATTGAAGCATCTAGCGTAAATGATTCAGTT 6416 ||| | | ||| || || | || | || ||||| ||| ||||||| ||||| Sbjct 907 CAAGATCAAGAAA--GGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTG 850 Query 6417 GCAATGCGTCAGGCATTTGGTAATTTATATGCAGCATTCCATTCAAACCCAGGGGTGATT 6476 || | | ||||||| | | |||| ||| ||||| | || ||||| || Sbjct 849 TACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATC 790 Query 6477 ACCGGTTCTGCCGTTGGATGTGATCCAGACCAGTTTTGGAGTAAAATACCAGTGTTGTTA 6536 |||||||| || ||||| || | ||||| ||| ||||| || ||||| | | | Sbjct 789 ACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTC 730 Query 6537 GAAGGAGAATTGTTTGCATTTGATTATTCCAATTATGATGCCAGCTTGAGTCCATGTTGG 6596 |||| | || || ||||| || || ||||| || || | || ||| ||| Sbjct 729 CCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGG 670 Query 6597 TTCGCAGCCCTAAA---AGTATTGTTGGAAAAGATTGGATTT---GGAGATAGAACCTAT 6650 ||| || || | ||| || ||||| |||||| | ||| | | | Sbjct 669 TTCAGGGCGCTGGAGATAGTCCTGCGGGAAA---TTGGATACTCCGAAGACGCAGTGTCT 613 Query 6651 TTCATTAATTACTTATGTTTCTCCCATCATATCTTTAAGGATTCTCATTATTATGTGTCT 6710 |||| | | | | |||||||| | | || ||||| ||| | Sbjct 612 CTCATAGAAGGGATCAATCACACCCATCATGTGTACCGCAATAAAACTTATTGTGTTCTT 553 Query 6711 GGAGGTATGCCATCGGGATGCTCAGGGACCAGTATATTCAACACAATGATAAATAATCTT 6770 || || ||||| || || |||||||| ||| || |||||| | ||||| || ||| | Sbjct 552 GGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATC 493 Query 6771 ATAATTCGGACATTATTAGTCAAGGTGTATAAACGAATCTCTTTGTCTGATTTGAGGATG 6830 || ||| | ||| | | | || | ||| | || | | ||| ||| ||| Sbjct 492 ATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTGAACATG 433 Query 6831 ATAGCATATGGTGATGATGTAATAGCC--TCACTCCCTTATAAGATTGA-TG-CTGGAAA 6886 | || || || |||||||| | || | || ||||| | ||||| || ||||| Sbjct 432 GTGGCCTACGGGGATGATGTGTTGGCTAGTTAC-CCCTTCCCA-ATTGACTGTCTGGAG- 376 Query 6887 ATTGGCGATTGCTGGACGAGACTATGGTCTAACAATGACTCCGGCTGACAAAGGAGAGAC 6946 ||||| | | || || ||||||||||| ||||| || || ||||| | Sbjct 375 -TTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTG 317 Query 6947 ATTCACTGATGTGACTTGGGAGAATGTCACCTTCTTAAAGAGATACTTTAGGTCAGATGA 7006 || | ||| || || |||||||||| ||| ||||| |||||| || | | ||| | Sbjct 316 CTTTAATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCA 257 Query 7007 GAGATTTCCTTTCCTAATTCATCCAGTTATGCCTATGAGTGAAATTTTCGAGTCCATTAG 7066 ||| || || || || || || ||||| ||||| || ||| ||| |||||| | Sbjct 256 TCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCG 197 Query 7067 ATGGACACGAAATGCAAAACACACCCAAGAACATGTCACCTCCCTGTGCTATTTGGCTTG 7126 ||||| | ||||| | || ||||| || || |||||| |||| || || || Sbjct 196 TTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATG 137 Query 7127 GCACAATGGCGAGGAAAAATATAATGATTTTCTTAAGAGAATCAGATCAGTACCAGTCGG 7186 |||||| || | || | ||| | | ||| | | |||||||||||| ||| | || Sbjct 136 GCACAACGGGAAAGAGGAGTATGAAAAATTTGTGAGTGCAATCAGATCAGTTCCAATTGG 77 Query 7187 CAA 7189 || Sbjct 76 AAA 74 >seq906 Length=2416 Score = 123 bits (136), Expect = 1e-24 Identities = 421/638 (66%), Gaps = 26/638 (4%) Strand=Plus/Plus Query 4010 TTCATGGTTAAAGAAATTTATAGAATTTACTAATGCGTTCAAGGGCCTGGAATGGTTGGC 4069 ||| ||| |||||||||||| || | | | ||| |||||| | |||||| | | Sbjct 809 TTCTTGGCTAAAGAAATTTAATGATATGGCGAGTGCCGCCAAGGGTTTAGAATGGATATC 868 Query 4070 AGCCAAAATTGAAAAATTTATTGAGTGGGTAAAAATGAAAATACTTCCGGCCGTGAGGGA 4129 ||||||| || || ||||| ||| | | ||| || |||| || | | ||| Sbjct 869 CAACAAAATTAGTAAGTTCATTGACTGGCTCAGGGAGAAGATTGTTCCAGCAGCCAAGGA 928 Query 4130 GCGTGCTGATTTTGTGAATAGACTGAAGCAATTGCCACTGCTGGAGGCACAGATGGCCAC 4189 | || || ||| | | | ||||||||||||||||| | ||| ||||| | | Sbjct 929 GAAAGCAGAATTTTTAACCAATTTGAAGCAATTGCCACTGTTAGAGAACCAGATCACGA- 987 Query 4190 ACTT-GAACACGCCGCTCCAAATCAGGAGAAACAAGAACGACTTTTTACAAATGTACAAT 4248 |||| || || ||||| | || ||| | | ||| | ||| ||||| || Sbjct 988 ACTTAGAGCAGTCCGCTGCCTCACAAGAGGACCTTGAAGCTATGTTTGGGAATGTGTCAT 1047 Query 4249 ATTTTGCAACATAT-TGCAGAAAATATGCTCCACTGTATGCCAGTGAAGCTAGGCGTGTC 4307 | | || ||| | || | || | ||| | || |||| ||||||| ||| ||| Sbjct 1048 ACCTCGCC-CATTTCTGTCGCAAGTTCCAACCATTATACGCCACGGAAGCTAAGCGAGTC 1106 Query 4308 T----TCCAGATGGAAAAGAAGATGAATAACTACATACAGTTCAAGAGCAAATCAAGGAT 4363 | || ||| ||| |||| |||| |||||||| ||||||||||||||| | || Sbjct 1107 TATGTTCTAGA--GAAGAGAA--TGAACAACTACATGCAGTTCAAGAGCAAACACCGTAT 1162 Query 4364 TGAACCCGTATGTTTATTAATCCATGGGAGTCCTGGTGCTGGAAAGTCTGTGGCAACTTC 4423 |||||| |||||| | | || || || || |||||||||| | || || Sbjct 1163 TGAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGG 1222 Query 4424 AATAATTGGCCGTGCAATAGCCGA-GAGTATTTCAGGGT-CAGTATATTCATTACCACCG 4481 || |||| || | ||||| || |||| ||| | || || ||| | ||||| Sbjct 1223 TATCATTGCTCGGGTCATAGCAGACAAGTA--TCACTCTAGTGTGTACTCACTTCCACCA 1280 Query 4482 GACCC-GACTTTCTTTGATGGGTATAAACAGCAGGAAGTGGTCA---TAATGGATGACCT 4537 ||||| ||| | ||||| ||||||||||||| ||||||||| | |||||||| || Sbjct 1281 GACCCTGACCAT-TTTGACGGGTATAAACAGC---AAGTGGTCACAGTTATGGATGATCT 1336 Query 4538 GCTACAGAACCCAGATGGTAAAGATGTTGGCA-TGCTGTGTCAAATGGTGTCCACAGTAG 4596 | || ||||| || || ||||| || || | | || || ||||||||||| || | Sbjct 1337 GTGTCAAAACCCTGACGGCAAAGA-CATGTCATTATTTTGCCAGATGGTGTCCACCGTGG 1395 Query 4597 ATTTCCACCCACCTATGGCAGCATTGGAGGAAAAAGGA 4634 |||| |||||| ||||| | | || ||||| ||| Sbjct 1396 ATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGGA 1433 >seq1144 Length=1302 Score = 113 bits (124), Expect = 2e-21 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6905 AGACTATGGTCTAACAATGACTCCGGCTGACAAAGGAGAGACATTCACTGATGTGACTTG 6964 ||| |||||| | || |||||||| || |||||| | |||| ||| || || || Sbjct 956 AGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAAGTAACATG 1015 Query 6965 GGAGAATGTCACCTTCTTAAAGAGATACTTTAGGTCAGATGAGAGATTTCCTTTCCTAAT 7024 ||| |||| |||||| | |||||| || | |||| | |||||| ||| |||| Sbjct 1016 GGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTCCATTCTTAAT 1075 Query 7025 TCATCCAGTTATGCCTATGAGTGAAATTTTCGAGTCCATTAGATGGACACGAAATGCAAA 7084 ||| || ||||| ||||| || || || |||||| ||||||| | | || Sbjct 1076 TCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAAGACGCGCG 1135 Query 7085 ACACACCCAAGAACATGTCACCTCCCTGTGCTATTTGGCTTGGCACAATGGCGAGGAAAA 7144 |||||||||| || || ||||||||| ||||| ||||||||||| |||| | Sbjct 1136 CAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGTAAGGATGA 1195 Query 7145 ATATAATGATTTTCTTAAGAGAATCAGATCAGTACCAGTCGGCAA 7189 |||| | | ||| | | ||| |||||||| ||||| || || Sbjct 1196 ATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTTGGAAA 1240 >seq945 Length=2018 Score = 100 bits (110), Expect = 1e-17 Identities = 248/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 855 CTGAAGTCCCCTAGTGCTGAGGCATGTGGGTACAGCGACCGAGTTGCACAACTGACAATT 914 |||||||| || ||||| || ||||| ||||| || || || |||||||| || ||| Sbjct 1620 CTGAAGTCTCCATCCGCTGAAGCTTGTGGTTACAGTGATCGCGTGGCACAACTCACCATT 1561 Query 915 GGCAATTCCACTATCACTACTCAGGAAGCCGCCAATGTGGTGGTCGCATATGGACAATGG 974 || || ||||| || ||||| ||||| || || || | | |||| || || | ||| Sbjct 1560 GGGAACTCCACCATTACTACACAGGAGGCGGCAAACATCATAGTCGGTTACGGTGAGTGG 1501 Query 975 CCTGAATATTTAGATTCGAAG--GATGCAACTGCCGTGGATAAGCCCACACAGCCCGATG 1032 || ||| | | | || | || || || || ||||| || || || | || |||| Sbjct 1500 CCCTCATACT--GCTCTGATGACGACGCCACAGCGGTGGACAAACCAACGCGCCCAGATG 1443 Query 1033 TAGCCTCAAATAGATTTTACACTCTTAAGACAGTGTCTTGGGAGAAGAGT--TCAACTGG 1090 | | ||||| ||||| || || |||| | || | ||| ||| || | || Sbjct 1442 TTTCGGTGAATAGGTTTTATACACTG--GACACTAAACTGTGGGAAAAGTCATCTAAGGG 1385 Query 1091 CTGGTATTGGAAATTCTCGGAT-TGTCTGGCTTCTGTTGGATTATTTGGACAGAATGTAC 1149 ||||||||||| || | ||| ||| || || ||| | ||||| ||||| | || Sbjct 1384 TTGGTATTGGAAGTTTCCTGATGTGT-TGACTGAGACCGGAGTCTTTGGCCAGAACGCAC 1326 Query 1150 AGTATCATTATTTAGGCCGTTATGGGTTAGCGGTTCATGTGCAATGTAATGCTTCAAAAT 1209 ||| ||| ||||| | | ||||| |||||||||||||||| ||| || | Sbjct 1325 AGTTTCACTATTTGTATAGATCAGGGTTTTGCATTCATGTGCAATGTAACGCTAGCAAGT 1266 Query 1210 TTCATCAGGG 1219 | ||||| || Sbjct 1265 TCCATCAAGG 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23480215231344