Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_004004.1 Length=8134 Score E Sequences producing significant alignments: (Bits) Value seq643 118 5e-23 seq906 100 1e-17 >seq643 Length=7254 Score = 118 bits (130), Expect = 5e-23 Identities = 123/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 4803 CCGCCCGACCCTGACCACTTTGACGGTTACAATCAGCAGACCGTCGTCGTGATGGACGAC 4862 || || ||||| |||||||||||||| ||||| || |||| |||| || ||||||||| Sbjct 2793 CCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGAC 2734 Query 4863 TTGGGCCAAAACCCAGACGGCAAAGAC-TTCAAGTACTTTGCCCAAATGGTATCCACCAC 4921 | |||||||||||||||| |||||| | | || |||| || ||||| ||||| Sbjct 2733 CTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTG-TCAGATGGTCTCCACAGT 2675 Query 4922 GGGGTTCATCCCGCCTATGGCCTCGCTCGAGGATAAGGG 4960 || || || ||||||||||| || || ||||| ||||| Sbjct 2674 GGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGG 2636 >seq906 Length=2416 Score = 100 bits (110), Expect = 1e-17 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 4803 CCGCCCGACCCTGACCACTTTGACGGTTACAATCAGCAGACCGTCGTCGTGATGGACGAC 4862 || || ||||||||||| |||||||| || || ||||| ||| || ||||| || Sbjct 1275 CCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAAGTGGTCACAGTTATGGATGAT 1334 Query 4863 TTGGGCCAAAACCCAGACGGCAAAGAC-TTCAAGTACTTTGCCCAAATGGTATCCACCAC 4921 || | |||||||| |||||||||||| | | || |||| ||| ||||| |||||| Sbjct 1335 CTGTGTCAAAACCCTGACGGCAAAGACATGTCATTATTTTG-CCAGATGGTGTCCACCGT 1393 Query 4922 GGGGTTCATCCCGCCTATGGCCTCGCTCGAGGATAAGGG 4960 || || ||||| || ||||| || ||||| || ||||| Sbjct 1394 GGATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGG 1432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25912071810224